Phodopus roborovskii (desert hamster): 127228885
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Entry
127228885 CDS
T08852
Symbol
Patl1
Name
(RefSeq) protein PAT1 homolog 1
KO
K12617
DNA topoisomerase 2-associated protein PAT1
Organism
prob
Phodopus roborovskii (desert hamster)
Pathway
prob03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
prob00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
127228885 (Patl1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
prob03019
]
127228885 (Patl1)
Messenger RNA biogenesis [BR:
prob03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
127228885 (Patl1)
mRNA degradation factors
5'-3' decay
Decapping complex
127228885 (Patl1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PAT1
Motif
Other DBs
NCBI-GeneID:
127228885
NCBI-ProteinID:
XP_051049947
LinkDB
All DBs
Position
Unknown
AA seq
770 aa
AA seq
DB search
MFRYESLEECPLDEDEDAFQGLGEEDEEIDQFNDDTFGSGAVDDDWQEAHERLAELEEKL
PAAADEQTGDRERDEMDLLGDHEENLAERLSKMVIENELEDPAIMRAVQTRPVLQPQPRS
LNSSIWDGSEVLRRIRGPLLAQEMPTVSVLEYALPQRPPQGPEDDRDLSERALPRRSTSP
VIGSPPVRAVPIGTPPKQMAVPSFNQQILCPKPVHVRPPMPPRYPAPYGERMSPNQLCSV
PNSSLLGHPFPPSVPPVLSPLQRAQLLGGAQLQPGRMSPSQFARVPGFVGSPLAAMNPKL
LQGRVGQMLPPAPGFRAFFSAPPPATPPPQQHPPGPGPHLQNLRPQAPMFRPDTTHLHPQ
HRRLLHQRQQQSRNQHRNLNGAGDRGSHRASHQDHLRKDPYANLMLQREKDWVSKIQMMQ
LQSTDPYLDDFYYQNYFEKLEKLSAAEEIQGDGPKKERTKLITPQVAKLEHAYKPVQFEG
SLGKLTVSSVNNPRKMIDAVVTSRSEDDETKEKQVRDKRRKTLVIIEKTYSLLLDVEDYE
RRYLLSLEEERPALVDERKHKICSMYDNLRGKLPGQERPSDDHFVQIMCIRKGKRMVARI
LPFLSTEQAADILMATARNLPFLIKKDAQDEVLPCLLSPFSLLLYHLPSVTVTSLLQQLM
NLPQSATAPAPSNPHLTAVLQNKFGLSLLLILLSRGEDLQSSDPAIESTQNNQWTEVMFM
ATRELLQIPQAALAKPISIPTNLVSLFSRYVDRQKLNLLETKLQLVQGIR
NT seq
2313 nt
NT seq
+upstream
nt +downstream
nt
atgttccgctacgagtctttagaggagtgtcctctagatgaagatgaagatgcgtttcaa
ggcctgggagaagaagatgaagaaattgatcaattcaatgatgatacgtttgggtcaggt
gcagttgatgatgattggcaggaagcacatgagcgcctggctgagttggaagagaagctc
cctgcagcagctgatgagcaaacaggcgatagagagagggatgagatggacttgttgggt
gaccatgaggagaatctagcagaaaggctcagtaagatggtgattgaaaatgagctagaa
gacccagctatcatgagggcagtgcagaccagaccggttttacaacctcaacccagaagt
ctgaattccagcatctgggatggatctgaagttctgaggcgaatccgtggaccattactt
gctcaggaaatgcctacagtgtctgtattagaatatgccttgcctcagaggcccccacag
ggcccagaagatgatcgagacctttctgagagagctttaccaaggaggtctacatcacct
gtcattggaagtcctcctgttagagccgttcctataggcaccccacctaagcagatggct
gttcccagcttcaaccaacagattctgtgtccgaagcctgttcacgtacggcccccaatg
ccaccacgttatcctgctccctatggtgagaggatgtctccaaaccagctctgcagtgtc
ccgaactcctcccttctgggccacccttttcctcctagtgttcctcctgtactcagtccc
ctgcagagagcacagcttcttggaggagcacagctacagcctggacggatgtctcccagc
cagtttgcacgggtccctggatttgttggtagccccctggctgccatgaatcctaagttg
ctacaagggcgagttgggcagatgcttcccccagcaccaggcttccgtgccttctttagt
gctccaccacctgctacgccccctccccaacagcatcctcctggcccaggacctcacctg
caaaacctaagacctcaggccccaatgtttagaccagacacaactcaccttcatccacag
caccggcgcctgttgcaccagaggcagcagcagagtagaaatcagcatcggaatctcaat
ggtgccggagacagaggaagtcaccgggccagtcatcaagaccatctccgaaaggaccca
tatgctaatctcatgctgcagcgggaaaaggattgggtctctaaaatccagatgatgcag
ctgcagagcactgatccctacctggatgatttctattaccagaattactttgaaaaactg
gagaaattgtcagctgctgaagaaatacaaggtgatggtcctaagaaggagcgtaccaag
ctcatcaccccccaggtggccaaactggaacatgcttataagcctgtgcagtttgagggt
tctttgggtaagcttactgtctctagtgtgaataatcctcgaaagatgatcgatgctgtt
gtgacatctcggagtgaagatgatgaaacaaaagaaaaacaggttcgggacaagagaaga
aaaacccttgtcataattgagaaaacctatagtttactccttgatgtggaggattatgaa
aggcgctatctcctaagtctagaagaagagcggcctgccctggtggatgaaagaaagcac
aaaatctgtagcatgtatgacaacctgaggggcaaattgcctggacaagaaaggccaagc
gatgaccactttgtacagatcatgtgtatccgaaaagggaagagaatggttgcccgcatt
ctccctttcctctccacagagcaagcagctgacattcttatggcaactgccaggaacctc
cctttccttatcaagaaggacgcacaagatgaggtgctgccatgcttactgagtcccttc
tctcttctcctctatcatcttccttcagtgactgtcaccagccttctgcaacagctaatg
aacctacctcaaagtgcaactgcaccagcaccctccaatcctcacctcactgctgtgctc
cagaacaagtttggcttgtcactgctcctaatcctcctaagccgtggggaagacctacag
agttcagaccctgctatagaatcaacacaaaataaccagtggacagaggtgatgttcatg
gcaacccgagaacttctacagatcccccaagcagccctggctaagccaatctctataccc
acaaatctagtgtcccttttttctcgctatgttgaccggcagaaactgaacttgctggag
acaaaactacagctggttcaggggatacgataa
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