KEGG   Phodopus roborovskii (desert hamster): 127229582
Entry
127229582         CDS       T08852                                 
Symbol
Vps41
Name
(RefSeq) vacuolar protein sorting-associated protein 41 homolog
  KO
K20184  vacuolar protein sorting-associated protein 41
Organism
prob  Phodopus roborovskii (desert hamster)
Pathway
prob04140  Autophagy - animal
prob04142  Lysosome biogenesis
prob04148  Efferocytosis
prob05132  Salmonella infection
Brite
KEGG Orthology (KO) [BR:prob00001]
 09140 Cellular Processes
  09141 Transport and catabolism
   04142 Lysosome biogenesis
    127229582 (Vps41)
   04140 Autophagy - animal
    127229582 (Vps41)
   04148 Efferocytosis
    127229582 (Vps41)
 09160 Human Diseases
  09171 Infectious disease: bacterial
   05132 Salmonella infection
    127229582 (Vps41)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:prob04131]
    127229582 (Vps41)
Membrane trafficking [BR:prob04131]
 Endosome - Lysosome transport
  Tethering complex
   Hops complex
    127229582 (Vps41)
SSDB
Motif
Pfam: TPR_Vps41 Beta-prop_Vps41 zf-RING_Vps41 Clathrin VPS18_solenoid_2nd zf_RING_Vps8_fungal WD40_CDC20-Fz WD40_Prp19 ANAPC4_WD40 Beta-prop_THOC3 Beta-prop_EML_2 WD40_WDHD1_1st Vps39_1 Beta-prop_HPS5 zf_RING_Vps8 TPR_PEP5_VPS11 Beta-prop_RIG_2nd Beta-prop_WDR3_2nd zf-RING_5 Beta-prop_IFT122_1st TPR_YpiA Beta-prop_WDR3_1st Frtz Beta-prop_ACSF4 CFAP251_N RIG-I_C Beta-prop_IFT140_2nd zf-rbx1
Other DBs
NCBI-GeneID: 127229582
NCBI-ProteinID: XP_051050622
LinkDB
Position
Unknown
AA seq 853 aa
MAEAEEQENGSLEESTDESEEESEEEPKLKYERLSNGVTEILQKDAASCMTVHDKFLALG
THYGKVYLLDVQGNITQKFDVSPVKINQISLDESGEHMGVCSEDGKVQVFGLYSGEEFHE
TFDCPIKIIAVHPQFVRSSCKQFVTGGKKLLLFERTWMNRWKSSVLHEGEGNIRSVKWRG
HLIAWANNMGVKIFDITSKQRITNVPRDDISLRPDMYPCSLCWKDTVTLIIGWGTSIKIC
SVKERHASEMRDLPSRYVEIVSQFETEFYISGLAPLCDQLVVLSYVKEVSEKTEREYCAR
PRLDIIQPLPETCEEISSDALTVRGFQENECRDYHLEYSEGESLFYIVSPRDVVIAKERD
QDDHIDWLLEKKKYEEALMAAEISQRNIKRHKILDIGLAYVNHLVERGEYDMAARKCQKI
LGKNAALWEYEVYKFKEIGQLKAISPYLPRGDPVLKPLIYEMILHEFLESDYEGFATLIR
EWPGDLYNNSVIVQAVRDHLKKDSQNKILLKTLAELYTYDKNYGNALEIYLTLRHKDVFQ
LIHKHNLFSSIKDKIVLLMDFDSEKAVDMLLDNEDKISIKKVVEELEDRPELQHVYLHKL
FKRDHHKGQRYHEKQISLYAEYDRPNLLPFLRDSTHCPLEKALEICQQRNFVEETVYLLS
RMGNSRSALKMIMEELHDVDKAIEFAKEQDDGELWEDLILYSIDKPPFITGLLNNIGTHV
DPILLIHRIKEGMEIPNLRDSLVKILQDYNLQILLREGCKKILVADSLSLLKKMHRTQMK
GVLVDEENICESCLSPILPTDAAKPFSVVVFHCRHMFHKECLPMPSMNAPAQYCNICSAK
SRGPGSAILEMKK
NT seq 2562 nt   +upstreamnt  +downstreamnt
atggcggaagcagaggagcaggaaaatgggtctcttgaagagtctacagatgaatcagag
gaagagagtgaagaggaacccaaactgaagtatgaaaggctttccaatggggtgacggag
attcttcagaaggatgcagcaagctgtatgacagtccatgacaagtttttggcactgggt
acacattatggaaaagtttatttacttgatgtccagggaaatatcactcagaagtttgat
gtaagtcctgtgaagataaaccagattagcttggatgaaagtggagaacacatgggcgtg
tgttcagaggatggcaaggtacaagtatttggactatattctggagaagaattccatgag
actttcgactgtcccattaaaatcattgctgtgcacccacagtttgtgagatccagttgt
aagcagttcgtgacaggagggaaaaagttgctgctgtttgaacggacgtggatgaacaga
tggaaatcttctgtcctgcacgaaggggaagggaacataaggagtgtgaaatggagaggc
catctgatagcctgggccaataatatgggtgtgaagatttttgacatcacctcaaagcaa
agaatcaccaatgttccccgagatgatataagtcttcggccagatatgtatccctgcagc
ctctgctggaaggacactgtgacactcattattggctggggaacttccatcaagatatgt
tcagtgaaggaacgtcatgccagtgagatgagggatctgccaagtcgatatgttgaaata
gtgtctcagtttgaaactgaattctacattagtggacttgcacctctctgtgatcagctt
gttgtgctttcctacgtaaaggaggtttcagaaaaaacggaaagagaatactgtgccagg
cctagactggacatcatccagccacttcctgagacttgtgaagagatatcatctgatgct
ctgacagtcagaggctttcaggagaacgaatgtagagattatcatttagaatactctgaa
ggggaatcacttttctatattgtgagtccaagagacgtcgtcatagccaaggaacgagac
caggatgatcatatcgactggctccttgagaagaagaaatatgaagaagctctgatggca
gctgaaattagccaaaggaacattaaaagacataagattctggatattgggttggcatat
gtaaaccacctggtggaaagaggagaatatgacatggctgcacgaaaatgccagaaaatt
cttgggaaaaatgcagccctctgggaatatgaagtttacaaatttaaagaaattggacag
ctcaaagcaatcagtccttatttaccaagaggggatccagtcctgaaacccctcatctat
gaaatgatcttacacgaatttttggaaagtgattatgagggctttgccacattgatcaga
gagtggcctggagatctgtataacaattcagtgatagttcaagcagttcgagaccacctg
aagaaagacagtcagaacaagattttattgaagacactggcagaattgtacacctatgat
aaaaattatggcaatgctctggaaatatacttaacattaagacataaagatgttttccaa
ctgatacacaagcataatcttttcagctccatcaaggataaaatagttttattaatggat
tttgattcagagaaagctgttgacatgcttttggacaatgaagataaaatttcaattaaa
aaagttgtagaagaactagaagatagaccagaattgcagcatgtgtatttacacaagctc
ttcaagagagaccatcataagggacagcgctaccatgagaaacagatcagtctgtatgct
gaatatgatcggccaaacctccttccctttctccgagacagtacccattgcccacttgaa
aaggctcttgagatctgtcaacaaagaaactttgtagaagagacagtttaccttctgagt
cgaatgggaaacagtcgaagtgccctcaagatgatcatggaggaattacatgatgttgat
aaagcaattgagtttgccaaggagcaagatgatggagagctctgggaagacctgattctg
tattccatcgacaaaccaccatttattactggcttgttaaacaacattggcacacatgtg
gacccgattctactaatccaccgtataaaggaaggaatggagatccccaatttgagagat
tccttggttaaaattctgcaagattataacttgcagattctgcttcgggaaggctgcaag
aaaatcctcgtagctgactctttgtcgttgctgaagaaaatgcacagaacccaaatgaaa
ggtgttctggtcgatgaagagaatatctgtgaatcgtgcctttctcccatcctcccaaca
gatgcggctaagcccttcagtgtggtggtcttccactgtcgacacatgttccacaaggaa
tgcctacccatgccaagcatgaacgctcctgcacagtactgtaacatctgcagtgctaag
agccgtggaccaggaagtgccatcctggagatgaagaagtag

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