Phodopus roborovskii (desert hamster): 127229841
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Entry
127229841 CDS
T08852
Symbol
Upf2
Name
(RefSeq) regulator of nonsense transcripts 2 isoform X1
KO
K14327
regulator of nonsense transcripts 2
Organism
prob
Phodopus roborovskii (desert hamster)
Pathway
prob03013
Nucleocytoplasmic transport
prob03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
prob00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
127229841 (Upf2)
03015 mRNA surveillance pathway
127229841 (Upf2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
prob03019
]
127229841 (Upf2)
Messenger RNA biogenesis [BR:
prob03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
127229841 (Upf2)
mRNA cycle factors
P-body specific factors
127229841 (Upf2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MIF4G
Upf2
Motif
Other DBs
NCBI-GeneID:
127229841
NCBI-ProteinID:
XP_051050836
LinkDB
All DBs
Position
Unknown
AA seq
1269 aa
AA seq
DB search
MPAERKKSASMEEKESLLNNKEKDCSERRPVSSKEKPKDDLKIPAKKEVSKVPEDKKKKL
EEDKRKKEDKERKKKEEEKVKAEEELKRKEEEEKKKHEEEEKKKQEEQAKRQQEEAAAQL
KEKEESLQLHQEAWERHQLRKELRSKNQNAPDNRPEENFFSRLDSSLKKNTAFVKKLKTI
TEQQRDSLSHDFNGLNLSKYIAEAVASIVEAKLKISDVNCAVHLCSLFHQRYADFAPSLL
QVWKKHFEARKEEKTPNITKLRTDLRFIAELTIVGIFTDKEGLSLIYEQLKSIINADRES
HTHVSVVISFCRHCGDDIAGLVPRKVKSAAEKFNLNFPPSEIISPEKQQPFQNLLKEYFT
SLTKHLKRDHRELQNTERQNRRILHSKGELSEDRHKQYEEFAMSYQKLLANSQSLADLLD
ENMPDLPQDKPTPEEHGPGIDIFTPGKPGEYDLEGGIWEDEDARNFYENLIDLKAFVPAI
LFKDNEKSQNKDANKDDSKEAKEPKDNKEASSPDDLELELENLEINDDTLELEGGDEAED
LTKKLLDEQEQEDEEASTGSHLKLIVDAFLQQLPNCVNRDLIDKAAMDFCMNMNTKANRK
KLVRALFIVPRQRLDLLPFYARLVATLHPCMSDVAEDLCSMLRGDFRFHVRKKDQINIET
KNKTVRFIGELTKFKMFTKNDTLHCLKMLLSDFSHHHIEMACTLLETCGRFLFRSPESHL
RTSVLLEQMMRKKQAMHLDARYVTMVENAYYYCNPPPAEKTVRKKRPPLQEYVRKLLYKD
LSKVTTEKVLRQMRKLPWQDQEVKDYVICCMINIWNVKYNSIHCVANLLAGLVLYQEDVG
IHVVDGVLEDIRLGMEVNQPKFNQRRISSAKFLGELYNYRMVESAVIFRTLYSFTSFGVN
PDGSPSSLDPPEHLFRIRLVCTILDTCGQYFDRGSSKRKLDCFLVYFQRYVWWKKSLEVW
TKDHPFPIDIDYMISDTLELLRPKIKLCNSLEESMRQVQDLEREFLIKLGLVNDKESKDS
MTEGENLEEDEEEEEGGAETEEQSGNESEVNEPEEEEGSDDDDEGEEEEEENTDYLTDSN
KENETDEENAEVMIKGGGLKHVPCVEDEDFIQALDKMMLENLQQRSGESVKVHQLDVAIP
LHLKSQLRKGPPLGGGEGETESADTMPFVMLTRKGNKQQFKILNVPMSSQLAANHWNQQQ
AEQEERMRMKKLTLDINERQEQEDYQEMLQSLAQRPAPANTNRERRPRYQHPKGAPNADL
IFKTGGRRR
NT seq
3810 nt
NT seq
+upstream
nt +downstream
nt
atgccagctgagcgtaaaaagtcagcaagtatggaagaaaaagaatctttactaaacaac
aaggagaaagactgcagtgagaggcggccagtgagcagcaaggagaaaccaaaagacgat
ctcaagatccctgccaagaaggaggtcagtaaagtccctgaagacaaaaagaagaaactt
gaagaagataagagaaaaaaagaagacaaggaacgcaagaaaaaagaggaagaaaaggtg
aaggcagaggaagaactaaagaggaaggaggaggaagaaaaaaagaaacatgaagaggaa
gagaaaaaaaagcaggaagagcaggccaaacggcagcaagaagaagcagctgctcagcta
aaagagaaagaagaatcccttcagcttcaccaggaagcttgggaacggcatcagttacga
aaggaactccgtagcaaaaaccaaaatgctccagacaaccgaccagaggaaaatttcttt
agtcgcctagattcaagcttaaagaaaaatactgcttttgtcaagaaactaaaaacaatt
acggaacaacagagagactccttgtctcatgattttaatggcctgaatttaagcaaatat
attgcagaagccgtagcttccattgtggaagcaaaattaaaaatctctgatgtgaactgt
gccgtgcacctctgctctctctttcaccagcggtatgccgactttgcgccctcacttctt
caggtgtggaaaaaacattttgaagcaaggaaagaggaaaaaacgcctaacattaccaaa
ctaagaactgacttgcgtttcattgcagaattgacaatagtgggaattttcactgacaaa
gaaggcctttccttaatctatgaacagctaaaaagtataattaatgctgatcgagaatct
cacactcatgtttctgtggtgattagtttctgtcgtcattgtggagatgatattgctgga
cttgtaccaaggaaagtcaagagtgctgcagagaagtttaatttgaactttcctcctagt
gagataattagtccagagaagcagcagcctttccagaatcttttaaaagagtactttacg
tctttgaccaaacacctgaaaagggaccacagggagcttcagaatactgagaggcaaaac
aggcgtattctgcattctaaaggcgagctaagtgaagataggcataaacagtatgaagaa
tttgcaatgtcctaccagaagctgctggcaaattctcaatccttagcagaccttttggat
gaaaatatgccagaccttcctcaggacaaaccaacaccagaagagcatggacctggaatt
gatatatttacacctggtaaacctggagaatatgacttagaaggtggtatatgggaagat
gaagatgctcggaatttttatgaaaaccttattgacttgaaagcatttgttccagccatc
ttgtttaaagacaatgaaaaaagtcagaacaaagatgctaataaagatgattccaaagaa
gccaaagaaccaaaggataataaggaggcatcaagtcctgatgatttggaacttgagttg
gagaatctagaaattaatgatgatacgctggaattagaaggtggagatgaagctgaagat
cttacaaagaaactccttgatgaacaagaacaagaagatgaagaagccagcactggatct
cacctcaaactcatagtagatgctttcctccagcaattgcccaactgtgtcaaccgagat
ctaattgacaaggcagccatggatttttgcatgaacatgaacacaaaggcaaacaggaag
aagttggtacgggcactcttcatagttcctagacaaaggttggatttgctaccattttat
gcaagattggttgctacattgcatccctgcatgtctgatgtagcagaggatctttgttcc
atgctgaggggggatttcagatttcatgtacgaaaaaaggaccagatcaatattgaaaca
aagaacaaaacagtccgttttattggagaactaaccaagtttaagatgttcaccaaaaat
gatacactgcattgtttaaagatgcttctgtcagacttttctcatcatcatattgaaatg
gcatgtactctactggagacctgtggacggtttcttttcagatctccagaatcacatctg
aggaccagtgtgcttttggagcaaatgatgagaaagaaacaagcaatgcatcttgatgct
aggtatgttacaatggttgagaatgcatattactactgcaacccacctccagctgaaaag
acagtgagaaagaaacgtcctcctcttcaggagtacgtccgcaaacttttgtacaaggat
ctctctaaggtcactactgagaaggttttgagacaaatgcgaaagttgccctggcaagac
caagaagtgaaagactatgttatttgttgtatgataaacatctggaatgtgaaatacaat
agtattcactgtgtagccaacctattagcaggactagtactctaccaggaggatgttggg
atccatgttgtggatggagtactcgaagatattcgattgggaatggaggttaatcaacct
aaatttaaccagaggcgtatcagtagtgccaagttcttaggagaactttataattacaga
atggtggaatcagctgttattttcagaactctttattcttttacttcatttggtgtcaac
cctgatggttctccaagttcactggaccctcctgaacatctgttcagaattagactagtg
tgcactattttggatacctgtggccagtactttgacagaggttccagtaaacgaaaactt
gactgcttccttgtatattttcagcgttatgtttggtggaagaaaagtttggaggtttgg
acaaaagatcatccatttcctattgatatagattacatgatcagtgatacactagaactg
ctaagaccaaagatcaaactctgtaattctctggaagaatccatgaggcaggtacaagac
ttggaacgagaattcttaataaaactaggcctagtaaatgacaaagaatccaaagattct
atgacagaaggggaaaatcttgaagaggatgaagaggaagaagaaggaggagctgaaact
gaagaacagtctggaaatgaaagtgaagtgaatgagccagaagaagaagagggttctgat
gatgatgatgagggagaggaagaagaagaggagaatacagattacctcacagattccaac
aaggagaatgaaactgatgaagagaatgctgaggtgatgattaaaggaggtggactgaaa
catgttccttgtgtagaagatgaggacttcatccaagctctggacaaaatgatgctagaa
aaccttcagcagagaagtggtgaatctgttaaagtgcaccaacttgatgttgctattcct
ttgcatctcaaaagccagctgaggaaaggacccccacttggtgggggggaaggagagaca
gaatctgcagacacaatgccgtttgttatgttaacaagaaaaggcaataaacagcagttt
aagattcttaatgtgcccatgtcgtcccaacttgctgcaaatcattggaaccagcaacaa
gcagaacaagaagagaggatgagaatgaaaaagctcacattagatatcaatgaacggcaa
gaacaagaagattatcaagaaatgttgcagtctcttgcacagcgcccagctccagccaac
accaatcgtgagcggcgacctcgttaccaacatccaaagggagcacctaatgcagatcta
atctttaagactggtgggaggagacgttga
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