Phodopus roborovskii (desert hamster): 127229994
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Entry
127229994 CDS
T08852
Symbol
Chd9
Name
(RefSeq) chromodomain-helicase-DNA-binding protein 9
KO
K14438
chromodomain-helicase-DNA-binding protein 9 [EC:5.6.2.-]
Organism
prob
Phodopus roborovskii (desert hamster)
Brite
KEGG Orthology (KO) [BR:
prob00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
prob03036
]
127229994 (Chd9)
Chromosome and associated proteins [BR:
prob03036
]
Eukaryotic type
Chromatin remodeling factors
Other chromatin remodeling factors
127229994 (Chd9)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SNF2-rel_dom
HTH_CHD6-9
BRK
Helicase_C
Chromo
ResIII
DEAD
HDA2-3
HTH_CHD1_Hrp3
Myb_DNA-bind_7
Motif
Other DBs
NCBI-GeneID:
127229994
NCBI-ProteinID:
XP_051051064
LinkDB
All DBs
Position
Unknown
AA seq
2886 aa
AA seq
DB search
MTDPMMDFFDDTNLFGETLEGLSDDAFVHPGPVSLVDELNLGAEFEPLHIDSLNHVQGTP
THQKMTDFDQLNQFDSMKFHQVNQSFGSPAEHVLSPHSQFHCSPVHPQNQANGLFQDVAD
GSPMWGHQTASGLSNQNGSPFHQQGHSHSLHQNKSFVVHHDFALFQASEHQTQCTSLRSQ
QNRSNINPGQNSLGQSKNFIDVNVSGPHRVNAHHPPHITNASSPQQSLSVHFSQAANPPV
HFLKCGSHQEGNFNRPSPSMTSCSVSNAQQFPAHYSFSSGHVSPSSLLQSSAVLAPSHTN
QALSDFAGNNSFSPHRGIKQESAQHILNSTPSLNSNNFQILHSSHPQGNYSNSKLSPVHM
NFPDPVDSGPPMGHFNDHVETNGFSSLEENLLHQVESHTEPFTGLDPEDLLQEGLLPQFD
ESTFGQDNSNHVLDHDFDRQFTSHLIARPSDMAQTQLQYQARSWPSSLSNHQHLHSRNHL
CLQRQPPSSKKNDGSGTYTKLQNTQVRVMSEKKPRKKVESESKQEKANRIISEAIARAKE
RGERNIPRVMSPENFPSASVEGKEEKRGRRMKSKPKDRDNKKAKTCSKLKEKTKIGKLII
TLGKKQKRKNESSDEPSDAEQLSQHTFKDQHSQKRRSNRQIKRKKYAEDTEGKQSEEEVK
GTIKMKKNLAPLPGEQPLQLFVENPSEEDAAIVDKILSSRIVKKEISPGVMLDVEEFFVK
YKNYSYLHCEWATEQQLLKDKRIQQKIKRFKLRQAQRAHFLADMEEEPFNPDYVEVDRIL
EVSFCEDKDTGESVIYYLVKWCSLPYEDSTWELKEDVDLAKIEEFEQLQASRPDTRHLDR
PPSNIWKKIDQSRDYKNGNQLREYQLEGLNWLLFNWYNRRNCILADEMGLGKTIQSITFL
YEILLTGIKGPFLIIAPLSTIANWEREFRTWTDINVVVYHGSLISRQMIQQYEMYFRDSQ
GRIIRGAYRFQAIITTFEMILGGCGELNAIEWRCVIIDEAHRLKNKNCKLLEGLKLMNLE
HKVLLTGTPLQNTVEELFSLLHFLEPLRFPSESTFMQEFGDLKTEEQVQKLQAILKPMML
RRLKEDVEKKLAPKEETIIEVELTNIQKKYYRAILEKNFSFLSKGAGQTNVPNLVNTMME
LRKCCNHPYLIKGAEEKILGEFRDTYNPSASDFHLQAMIQSAGKLVLIDKLLPKMKAGGH
KVLIFSQMVRCLDILEDYLIHKRYLYERIDGRVRGNLRQAAIDRFSKPDSDRFVFLLCTR
AGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQNKAVKVYRLVTRNSYEREMFDR
ASLKLGLDKAVLQSMSGRDGTVSGIQQLSKKEIEDLLRRGAYGAIMEEEDEGSKFCEEDI
DQILLCRTKTITIESEGRGSTFAKASFVASGNRTDISLDDPNFWQKWAKKAEIDIDAISG
RNSLVIDTPRIRKQTRPFSATKDELAELSEPESEGEEKPKLRRPCDRSNGYGRTECFRVE
KNLLVYGWGRWRDILSHGRFKRHLNEQDVEIICRALLAYCLVHYRGDEKIKGFIWDLITP
TEDGQTRELQNHLGLSAPVPRGRKGKKVKTQTSSFDIQKAEWLRKYNPEQLLQDEGYKKH
VKHHCNKVLLRVRMLYYLKQEVIGNECQKVFDGVDASDIDVWVPEPDHSEVPAVWWDFDA
DKSLLIGVFKHGYEKYNTIRADPALCFLERVGKPDDKAVAAEQRANDYMDGDVEDPEYKP
APAIFKDDIEDDVSSPGDLIIADGDGQLMEGDKVYWPTPSALTTRLRRLITAYQRTNKNR
NIQQIQPTFSVPANVIQPVYEEATLNPKMAAKIERQQRWTRREEADFYRVVSTFGVVFDP
DRGQFDWTKFRAMARLHKKTDNSLEKYLYAFMSMCRRVCHLPSKEELVDPNIFIQPITEE
RASRTLYRIELLRKVREQALRHPQLFERLKLCHPNPDLPIWWECGPHDRDLLIGAAKHGV
SRTDYHILRDPELSFMAAQRNYNQSKVAHSRTCTPLLQQYQAALSASPLTSLPRLLDAKG
TLLEDVKVKNENLKEESSEEESMSSVETRTRVKSEPVSPKNGVLSQATGDLKSGGKSETD
RRMVAARTEPLTPNSASKKQRVHKRGSESSSDSDSDSERSSCSSRSSSSSSSSSCSHSRS
GSSSSSSSSCSSASSSSSSSSSSSSEESDSEEEVQKQEGAPHVKAYDEESVASLSTTQDE
TQDSFQANNGTPESAYLLQGGYMLAASYWPKDRVMINRLDSICQTVLKGKWPSARRNYDA
NTVASFYTTKLLDSPGAATEYSEPSVPTPPAVAVKEEHEQSTQMSKVKKHVREKEFTVKI
KDEGGLKLTFQKQGLAQKRPFDGEDGALGQQQYLTRLRELQSASETSLVNFPKSMPASGT
SIQSTLGANGVILDNQPIMKKRRGRRKNVEGVDILFLNRNKPPNHFSLDLTTSQISTGIN
PALSYTQPQRIPDTESPVPVINLKDGTRLAGDDAPKRKDLDRWLKEHPGYVEDLGAFIPR
VQLHEGRPKQKRHRCRNPNKLDVNSLTGEERVQLINRRNARKVGGAFAPPLKDLCRFLKE
NSEYGVAPEWGDVVKQSGFLPESMYERILTGPVVREEVSRRGRRPKSGISKATIAATAPA
SSVPGNPLLTNGLLPGVDLTALQALQQNLQNLQSLQVTAGLMGMPAGLSSGGETKNMAAM
FPMLLSGMAGLPNLLGMGGLLSKTAESGAEEKKGSDSKELEGKKERTESQSSENGGESCV
SGSPSTSSTAALSPAAAAKPIALNPLLLSNILYPGMLLTPGLNLHIPTLSQPNTFDVQKN
KNNDLGSSKSVEIKEEASRVRDQKEKGGTEPSPLNENSTDEGSEKASSGSDSTSSSSEDS
DSSNED
NT seq
8661 nt
NT seq
+upstream
nt +downstream
nt
atgacagacccaatgatggatttttttgatgatactaatctttttggtgagaccttagaa
ggcctgtcagatgatgcgtttgtccatccgggacctgtttcactagtggatgaattgaac
ttgggtgcagagtttgagcctttgcacatagattcactaaaccatgttcaaggcactccc
acacatcagaagatgacagattttgatcagttaaatcagtttgactcaatgaaatttcat
caagttaatcagtcttttggcagcccagctgaacatgtattgtctccacactctcaattt
cattgctctccagtccatccccaaaaccaagccaatggtttgtttcaagatgtagcagat
ggcagtccaatgtggggtcatcagacagcctctggcctttctaatcaaaatggatctcct
tttcatcaacaaggacattcacactctctacatcagaataagagttttgtggtgcaccat
gactttgccttatttcaggccagtgaacatcagacacagtgtacttcacttcgctcacaa
caaaacagaagtaatattaatccagggcaaaattctcttggccagtctaaaaattttata
gacgttaatgtttctggtccccacagagttaatgctcaccacccaccacatataactaac
gcctcctctccccaacagtctctttcagtgcacttttctcaagcagcaaatcccccagta
cacttcctcaagtgtggcagtcatcaggaaggaaactttaacagaccttctccaagtatg
acttcctgttctgtcagcaatgcacagcagtttcctgcacattactccttctccagtggt
catgtgtcaccaagcagtctccttcagtcatctgcagttcttgcacctagtcatacaaat
caggctttatctgattttgctggaaataactccttttcacctcacagaggaattaagcaa
gaatctgctcagcatattctaaactccactccatcattaaattcaaataattttcaaatt
ttacattcgtcacatcctcagggtaattatagcaattcaaaattatctcctgtgcacatg
aacttcccagatcctgttgactcaggacctccaatgggtcatttcaacgaccatgtggaa
actaatggtttttcatctttagaagagaatttacttcatcaagtggaatctcatacagaa
ccatttacaggacttgacccagaggacctccttcaagagggtctcctccctcaatttgat
gaatcaacatttggacaagataattcaaatcatgttttagatcatgactttgatcggcag
tttacttcacatcttatagcgcgaccttctgacatggctcaaactcagctgcaatatcag
gctcggagttggccttcctcattgtctaatcatcagcatttacatagcagaaatcatcta
tgtttacagcgacagcctccatcttccaagaagaatgatggttctgggacatatactaag
ttgcagaatacccaggtgagggtcatgtccgagaaaaagccaagaaaaaaggtggaatca
gaaagcaaacaagaaaaggctaatcgaataatatcagaggctatagcaagagcaaaggaa
cgtggggaacgtaatattccacgagtaatgagccctgagaactttcctagtgcttcagtt
gaagggaaagaagaaaagagaggccgaaggatgaaatctaagccaaaagacagagataac
aagaaagcaaaaacttgttcaaagttgaaagagaagacaaaaattggtaaactgattatt
acattgggtaagaaacaaaaaagaaagaatgagtcttcagatgagccgtctgatgcagag
cagctgtcccagcacacattcaaagaccaacactctcaaaaaagaagatcaaatcgacaa
attaaaagaaaaaaatatgcagaagatacagaaggaaaacaatctgaagaagaggtcaag
ggcactataaaaatgaaaaagaatttagctcctctgcctggtgaacagcctctgcagtta
tttgtggaaaatccaagtgaagaagatgctgcaattgtagacaaaatactatcttctaga
attgtaaaaaaggaaatatcacctggagttatgcttgatgtagaagaattttttgtgaaa
tataaaaattactcttatctccactgcgaatgggccacagaacaacaacttttgaaagat
aaaaggatccagcagaaaatcaaacgattcaagctaagacaagcacagagggcacatttt
ttggcagacatggaagaagaaccctttaacccagactacgttgaagtagacaggatactg
gaagtttctttttgtgaagataaggatactggtgagtctgttatttactacttggtaaag
tggtgctcattaccatatgaagatagtacctgggaattaaaagaagatgtggatcttgca
aaaattgaagagtttgaacaactgcaagcttcaaggcctgacacaagacatttggatcgt
cctccctctaatatttggaagaaaatagatcaatccagggactataaaaatggtaatcaa
ctcagggaatatcaactagaaggactcaactggcttttattcaattggtataatagacga
aactgcatcttagcagatgaaatgggtcttggcaaaaccattcagtcaattacattcctc
tacgaaatccttctgactggtataaaaggacctttcctgattatcgcaccactttctacc
attgccaattgggaaagagaattccgtacatggactgatatcaatgttgtagtttatcac
gggagcttgattagcagacaaatgatacagcaatatgagatgtacttcagggattcacag
gggcgcatcattcgaggagcttaccgattccaagccatcatcactacctttgaaatgatt
cttggaggctgtggagaacttaatgcaatcgagtggcggtgtgtgattattgatgaagca
cacaggttaaaaaataaaaattgtaaactcctggagggtctgaaactcatgaatctggaa
cataaggtgctcttgactggcactcctctccaaaatacagttgaagaattgttcagtctt
cttcactttcttgaacccttaaggtttccttctgaatccacatttatgcaagaatttgga
gatctgaaaacagaggaacaggtacagaaacttcaggctatccttaaaccaatgatgctg
agacgattaaaagaagatgtggaaaagaaattggcacctaaggaagagactattattgaa
gtagagcttaccaacattcaaaagaaatactatagggctatcttagagaagaacttttcc
tttctatctaaaggcgctggacaaactaatgttcctaacttggtcaataccatgatggag
ctcagaaaatgctgcaatcacccatatcttatcaaaggtgctgaggagaaaatacttgga
gaatttcgagatacatacaatccatctgcttctgattttcacctgcaagcaatgatccag
tctgctggtaaattggtcctcattgataagttacttcccaaaatgaaagcaggaggccat
aaagtgcttatcttctctcagatggtccgctgccttgacatcctggaagactatcttatt
cataaaagatatttatatgagcggattgatgggagagtcaggggaaatcttcgacaagca
gctatagatcgatttagtaaacctgactcagatcgattcgtttttctcttgtgtacccga
gctggtggtctgggcatcaatctaactgcagctgatacatgcataatttttgattctgat
tggaatcctcaaaatgacctccaggcccaagctcgttgtcacagaattggtcagaacaaa
gcagttaaagtctacagattagtaactcgtaactcatatgagagagagatgtttgaccga
gccagcttgaaacttggcctagataaggctgttctacagagcatgagcggaagagatggc
actgtcagtggtattcagcagctgtccaaaaaggaaatagaagacctgctgagaagaggt
gcatatggagccatcatggaggaggaagatgaaggctctaagttctgtgaagaagatatt
gatcagattttgctctgtcgaacaaaaactattacaattgaatcagaaggacgtgggtca
acatttgctaaggcaagttttgtagcatctggaaatcggacagatatttccttagatgat
cctaacttctggcagaaatgggctaaaaaggcagaaatagatatagatgccatcagtggc
aggaacagtttagttatcgacaccccaagaattaggaaacaaaccagaccctttagtgct
acaaaagatgaattggctgaattatctgaacctgaaagtgaaggagaagaaaaacccaaa
ctccggagaccctgtgaccggtccaatggctatggaagaactgaatgttttagagttgag
aaaaacctgctggtttatgggtggggccgatggagagatattctgtctcatgggcgtttt
aaacggcacctgaatgaacaagatgtagaaatcatttgtcgagctcttttggcctattgc
cttgttcattatcgaggtgatgagaaaattaaaggtttcatatgggatctcatcactccc
actgaagacggccagacacgtgaactacaaaatcatttaggcctctcagctcctgtgccc
agaggccgaaaggggaagaaagtaaagactcagacaagctcctttgatatacagaaagca
gagtggcttcgaaaatacaatcctgagcagctccttcaagatgaaggctacaagaaacat
gtaaagcaccactgcaacaaagttttgcttcgtgtaaggatgctatactacctaaagcaa
gaagtcattggaaatgagtgtcaaaaagtatttgatggagttgatgcaagtgacattgat
gtttgggtaccagagccagatcactcagaggttcctgctgtgtggtgggactttgatgct
gacaagtcacttcttattggggtttttaagcacggttatgaaaaatataataccatccga
gcagacccagcattgtgcttcttggaaagagtgggaaagcctgatgacaaagctgttgct
gctgagcagagagcaaatgattacatggatggggatgtggaagacccagaatacaaacct
gccccggccatctttaaagatgatatagaggatgatgtttcctcacctggagatctcatc
atagcagatggagatggtcaattgatggaaggggataaagtttattggcctactccatca
gctctgaccacacggttgagacgtctgatcactgcatatcagcgaactaataaaaacaga
aacatccagcaaatacagccaaccttctcagtgcctgccaatgtaattcagcctgtttac
gaagaagctactcttaaccctaaaatggcagccaagatagaacgacagcagagatggaca
aggagagaagaggctgacttttatagagttgtgtctacgtttggagtagtttttgaccct
gacagaggccaatttgattggacaaaattcagagctatggctaggctacacaagaaaact
gataacagtttggagaagtatttgtacgcattcatgtccatgtgtcggagggtttgtcat
cttccttccaaagaagaattggtggatccaaatatttttatccaaccaatcacagaagag
cgtgcttctaggactttatatcgcattgaacttctaaggaaagtacgggagcaggccctt
cgacacccacagctgtttgaacggttgaagctttgtcatccaaatccagacttacctatc
tggtgggaatgtggccctcatgatagggatttgcttattggtgctgccaagcatggagtg
agccggacagactatcacattctgcgtgatcctgaactctcgtttatggcagctcaacgg
aactataatcagagtaaggtggctcattcaaggacttgtaccccacttttacagcaatac
caagcagcactttctgcttctcctcttacctctttgcctaggctgctagatgctaaaggt
actcttctagaggatgtgaaagttaaaaatgaaaaccttaaggaagagtcttctgaagaa
gaatctatgtcttctgtggaaacaaggacacgagttaaatctgagcctgtaagtccaaag
aatggtgttttatcacaggctactggagacctgaaatctggtgggaaaagtgaaacagac
agacgaatggttgcagccagaacagaacccctaactccaaactcagcttccaagaaacag
agagttcacaaaagagggtcagagtccagttctgactctgactctgattctgagcgctca
tcatgttcttccagatcctcctcctcctcttcctcctcctcttgctcacactctagatca
ggttctagttcttcttcatcctcatcttgttcttcagcatcctcctcctcctcctcctca
tcttcatcatcatctgaagaaagtgacagtgaagaagaagtccaaaagcaagagggtgcc
cctcatgtgaaagcctatgatgaagaaagtgttgcatcgctaagcactacccaggatgag
acccaggatagtttccaggcaaacaatggaacaccagagtctgcttacctattacaaggt
ggatatatgctggcagcctcatattggccaaaggatcgggtgatgatcaaccgtttggac
agtatttgtcaaacagttctgaaagggaaatggccttcagctagaagaaattatgatgcc
aatacggtggcttctttctataccacaaaactgctggatagtccaggagcagccacagaa
tatagcgagcccagtgtccctacgcccccagctgttgctgtcaaagaagagcatgaacag
tcaacacagatgtcaaaggtgaagaagcatgtacgcgaaaaggagtttacagtgaaaatc
aaagacgagggtggcttgaagttgacatttcagaagcaggggcttgcccagaaaagaccg
tttgatggtgaagatggtgccctgggccagcagcagtacctcactcgacttcgggagctc
cagagtgcttcagagacgagccttgttaattttccaaaatctatgccagcatcaggtact
tccattcagtcaactcttggtgccaatggagtgatattagacaaccagcctatcatgaag
aaaagacgcggaaggaggaagaatgtagaaggtgttgacatcctctttttaaacagaaat
aagccacctaatcatttttctttagacttaaccacctcacagatttccacagggataaac
ccagcactatcctatactcagcctcagaggattcctgatacagaaagtccagttccagtt
attaatctcaaagatgggacaagactcgcaggagatgatgcgccgaagagaaaggacctg
gacagatggcttaaggagcatccaggctatgtggaagacttaggagcttttattccaaga
gtgcagcttcacgagggaagacccaaacagaaaaggcatcgatgccgaaacccaaacaaa
ctggatgtcaacagtctcactggagaggaacgtgtacagctaattaacagaaggaatgca
agaaaggttggaggtgcatttgctccccctttgaaggatttatgtagattcctgaaagaa
aattcagaatatggagtagctccagaatggggagatgttgttaagcaatctgggtttctt
ccagaaagtatgtacgaacgtattctcactggtcctgttgtgagagaggaagtaagcagg
cggggaagaaggcccaagagtggaatttccaaggctacaatagcagcaactgctcctgcc
agcagtgtgccaggcaatcctttgttgaccaacggattacttccaggtgtggatcttaca
gctcttcaggccttacaacaaaatctacagaacctgcagtcattgcaagtgactgcaggg
ttgatgggcatgcctgctggtctttcttctggaggagaaactaagaacatggctgctatg
ttccccatgctactgtcaggaatggctggattaccaaatctgctaggcatgggaggactc
ctgtcaaagactgcagaatctggggctgaagaaaaaaaaggaagtgactctaaggagcta
gaaggaaaaaaagaaaggacagagagccaaagttcagagaatggaggagaaagctgtgtg
tcaggttctccttcaacttcctccacagctgcattgagtccagctgcagctgccaagccc
atagctcttaacccactattgctgtctaatatactttacccagggatgctgctcactcca
ggccttaatcttcatattccaaccttgtctcagcctaatacttttgatgtacagaaaaac
aaaaataatgacttaggttcatctaagtcagtagaaataaaggaagaagcttccagagtt
agagatcagaaagagaaaggaggaactgaacctagtcctctcaatgaaaacagcacagat
gagggttcagagaaagcttcttctgggtctgatagcacatcatcatcatctgaggattca
gactcaagcaatgaagattga
DBGET
integrated database retrieval system
