Phodopus roborovskii (desert hamster): 127230746
Help
Entry
127230746 CDS
T08852
Name
(RefSeq) LOW QUALITY PROTEIN: E3 ubiquitin-protein ligase RBBP6-like
KO
K10624
E3 ubiquitin-protein ligase RBBP6 [EC:
2.3.2.27
]
Organism
prob
Phodopus roborovskii (desert hamster)
Brite
KEGG Orthology (KO) [BR:
prob00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
prob04121
]
127230746
Enzymes [BR:
prob01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
127230746
Ubiquitin system [BR:
prob04121
]
Ubiquitin ligases (E3)
U-box type E3
127230746
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DWNN
zf-CCHC_2
zf-CCHC
zf-C3HC4_3
zf-C3HC4_2
U-box
zf-RING_UBOX
zf-RING_5
zf-RING_2
zf-C3HC4
zf-C3HC4_4
zf-CCHC_5
Motif
Other DBs
NCBI-GeneID:
127230746
NCBI-ProteinID:
XP_051052013
LinkDB
All DBs
Position
Unknown
AA seq
1190 aa
AA seq
DB search
MSCVHYKFSSKLHYDIVTFDGLHISLCDLKKKIMSREKLKATHSDLQISNAQTKEDYPED
TALIPKNSSVIVRRIPAAGVKSTSRTYVKSRSERGMGTTKAIDGSPASISLAQLTRTANL
AEANAAEEDKIQAMMAQSGHRYDPVNYTKKAVGPPPPSYTCFRCGKPGHYIKDCPTNGDK
DFEPGRRIKRSSGIPTSFMMEVKDPSIKGAMLTNTGKYAIPKIDAEAYAIGKKEKPPFLP
EERSSSSSSDDDPIPEELLCLICKDLMTDAALIPCCGNSYCDECIRTALLESDDHTCPTC
QQNEVSPDALTANKFLRQAIENFKNGTGYPIRLRQQVRPPPRPLPPPRPRAQRTPQPLMR
SPISRQQDPSMTPGASSSSRRPTPSVASSFPSNPSCLAPPVPGNPSPAPAPGPDRTAAAT
VSVHSEKSEGPVRDSDTKLSPAAALAWEHSEGACSMASAALVGGWKGHRVPALGAPSLLG
QSPSGGQLIPTTGPVGINTARPGGGPPGWGRSNKLGYPVSPPQPIRRGERNCYRSINRGR
RHSERSQGPQDPSLPATPVFVPVPPPPLYAPPPDALPLPPGVPPAQFSPQFPPAGSPAAL
ANISTLWVSSGAQTAHSNALPTAQAPPVTREEFYRAPPQLKGGSTSPSSGSSYSRSSYPC
LKSRSGLTRSGSCSRSFSRSHSRSLSPSPPYPRRGRGKSRNFRSRSRSRGRGDHRSRSRS
PPHRHRRYRARSPQAFGGQSPRKPNGHQGETERQYFNRCREVPPPYGNKACSGPSVERRD
PFEKERYHREPEREYREWYRKYYKGYAVGAQPRPAADRGGFSPERLKPPTVRNPPFPGGR
RDDCRAGRSHRTRNLGGSYPEKLSSRENHNRKDNAEAQEWENVAGDDKGNKPEKHRKGRK
GEESESVLAHELLEPSGTSRESSRADDTKTETLVFLPRREDATPVRDEPMGAESVTCESV
SERDKRENGKPNRKSDETKRKSDGSAQAKKEKVLRPSKGPQDKEDGEPGKAPWSEPPLKN
AKEDGAKTGSAKASPSFQKDDDVTGTPRRAHSKSVKGHLETEPVKKEKVTRDSTKDIQPE
KPAGEDEKAKKPEKSTLLVHKGGKRKRKAEEKNRDEDFDERNKKEKERLLKIKRNTGPRG
PNNFWILGLSGLVFVDKSYLGAPGPPSGPHFRPRPLGPRAAAIVSRQQGA
NT seq
3573 nt
NT seq
+upstream
nt +downstream
nt
atgtcctgtgtgcactataaattttcctctaaactccactacgacatcgtcacctttgat
gggctccatatctccctctgcgacttaaagaagaagattatgagcagagaaaagctgaaa
gctacccatagcgatctgcagatcagcaacgcacagacgaaagaagactatcctgaggat
actgcgctcattcctaaaaattcatctgtaattgtcagaagaattcctgcggcaggtgtg
aagtccacaagcaggacctatgttaaaagtcgaagtgaacgagggatgggaactacaaaa
gcaatcgatggctctcctgcgtctatttctctggcccagcttacaaggaccgccaatctg
gctgaagccaatgctgccgaggaagataaaatccaagcaatgatggcgcaatctggccat
cgatacgacccagtcaactacacgaagaaagctgtaggtccaccacctccatcttatacc
tgctttcgttgcggcaagcctggccattatattaaggattgcccaacaaacggggataag
gactttgaacctggccgtaggatcaaaaggagcagtggaattcccacaagttttatgatg
gaagtgaaggatcccagcataaaaggcgcgatgcttacgaacactggaaaatacgcaata
ccaaagatagatgcagaggcctatgcaattgggaagaaagagaagccacccttcttgcca
gaggagcggtcatcgtcatcatcttcagacgatgatcctatcccagaggagcttctgtgc
ctcatctgcaaggaccttatgactgacgctgctctcatcccctgctgtggaaacagttac
tgtgatgagtgtatccggacggcactcctggagtcggatgaccatacatgtccaacgtgt
cagcaaaacgaagtttctcctgatgccttgacggccaacaagtttttacggcaggctatt
gagaacttcaaaaacgggactggctatccaataagactgcgacaacaggtacggccaccc
ccacgcccattaccaccaccaagaccacgcgcccagcggaccccgcagcctctgatgagg
tctccaatatcaagacagcaggatccttccatgactccaggggcgtcttcctcctctcgt
cgtccaactccctccgtagcgtcgtcgttcccttcaaatccatcttgcttggctcctcct
gtgcctggaaatccgtctcctgccccagctccaggacccgatagaactgcagcagcgact
gtctcggtccattcggaaaagtcagagggccctgtccgggattctgatactaaattatcg
ccagctgccgccctcgcatgggaacactcggagggagcctgctcaatggcaagcgctgca
ctcgtgggagggtggaagggtcaccgagtgcctgcccttggagctccatcattgctggga
cagtcaccatcaggtggacagctgatccccacaaccggtccagtaggaataaatactgct
cgtccaggtggtggtccaccaggttggggacgttccaacaaactcggctacccggtttct
ccgccacagcccattagaagaggggaaagaaattgttacagaagtatcaaccgcgggcga
cgccacagcgaaagatcacagggccctcaagacccgtcactaccggcaactccagtcttt
gtacccgtaccaccgcctcctttgtatgcgccgcctcccgatgcgctccctcttcctccg
ggtgtacctcccgcacagttttctcctcagtttcctcctgcaggatctcccgcagctctc
gccaacatatcaacgctttgggtttcgtcaggggctcagactgctcattcaaacgccctc
cctaccgcgcaagcaccacctgtgaccagggaagaattctatagagcgccaccacaacta
aagggagggtctacatcgccctctagtggttcatcgtattcaagaagttcatacccttgc
ttgaaatcaagatctggcttgacaaggtcaggctcttgctctcgatccttcagccgctca
cactctcgctccctttcaccatcacccccatacccgaggagaggcagaggcaagagccgc
aattttcgttcacggtccagatctcgcggacgtggtgatcaccgatcgaggtcaaggtcg
cctccacatagacatagacgttatcgtgcaagatctcctcaagcctttgggggtcagtct
cccaggaagccgaatggacatcaaggagaaacagaacgtcagtattttaatagatgcaga
gaagttccacccccttatggcaataaagcctgttccggaccgagtgtcgaaaggagagac
ccatttgagaaagaacgctaccaccgagaaccggagagggaataccgagagtggtaccgg
aagtactacaaaggatatgctgtgggggcacagccgaggcccgctgctgacagagggggc
ttctctccagaaaggcttaaacctcctactgtcagaaatccacccttccctggggggcgc
agagacgactgtcgtgctggacgaagtcacagaactagaaatctaggtggcagctatcca
gaaaagctgtcatcgagagagaatcacaatcggaaagataatgcagaagcacaggagtgg
gagaacgttgccggcgacgataaaggaaacaagcccgagaaacacagaaaaggaagaaag
ggggaggagagtgagagcgtcctggcccacgagctgttagagccttccgggacatccaga
gagtcatctcgtgctgatgacactaagacagaaacactcgttttcctcccaaggagagag
gatgctacccctgttagggatgaacccatgggagcagaatctgtcacttgcgaatcagta
tctgaaagagacaagagagaaaacggtaagccaaaccgaaagagtgatgagaccaaacgg
aaaagcgatggctctgctcaagccaagaaagaaaaagttttaagaccttctaaaggaccc
caagacaaagaagacggggagcctggaaaagctccttggtccgaacctccacttaaaaac
gccaaagaagacggtgcaaagaccggctctgcaaaagcgtcaccatcatttcagaaggat
gacgatgtcaccggaactcccagaagagcccactctaaatctgtaaagggacacctcgag
acagagccagtcaagaaggagaaggtgacaagggactctaccaaagacatccagccagaa
aagccggctggtgaggatgaaaaggccaagaagcctgagaaaagcacactacttgttcac
aagggaggaaaaagaaagaggaaggcggaggaaaagaatagagatgaagattttgacgag
cgaaataaaaaagagaaagagcggctcctgaagatcaagcgaaacactgggcctcgtgga
ccgaacaacttctggattcttggactttccggcctggtctttgtagacaagagttacctc
ggagccccggggccaccttcaggcccacacttcaggccgagacccctgggccccagagct
gctgcaatcgtcagccgtcagcagggtgcctag
DBGET
integrated database retrieval system
