Phodopus roborovskii (desert hamster): 127231114
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Entry
127231114 CDS
T08852
Symbol
Dicer1
Name
(RefSeq) LOW QUALITY PROTEIN: endoribonuclease Dicer
KO
K11592
endoribonuclease Dicer [EC:3.1.26.-]
Organism
prob
Phodopus roborovskii (desert hamster)
Pathway
prob05206
MicroRNAs in cancer
Brite
KEGG Orthology (KO) [BR:
prob00001
]
09160 Human Diseases
09161 Cancer: overview
05206 MicroRNAs in cancer
127231114 (Dicer1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
prob03036
]
127231114 (Dicer1)
Chromosome and associated proteins [BR:
prob03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
127231114 (Dicer1)
microRNA pathway
RISC loading complex
127231114 (Dicer1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Dicer_platform
Dicer_dsRBD
Ribonuclease_3
Dicer_PBD
Ribonucleas_3_3
Dicer_dimer
PAZ
Helicase_C
ResIII
DEAD
Cas3-like_C_2
DSRM_2
Motif
Other DBs
NCBI-GeneID:
127231114
NCBI-ProteinID:
XP_051052504
LinkDB
All DBs
Position
Unknown
AA seq
1917 aa
AA seq
DB search
MNEKPCFAALSMAGLQLMTPASSPMGPFFGLPWQQEAIHDNIYTPRKYQVELLEAALDHN
TIVCLNTGSGKTFIAVLLTKELAHQIRGDLNPRAKRTVFLVNSANQVAQQVSAVRTHSDL
KVGEYSNLDVNASWTKERWSQEFTKHQVLIMTCYVALNVLKNGYLSLSDINLLVFDECHL
AILDHPYREIMKLCESCPSCPRILGLTASILNGKCDPEELEEKIQNLEKILKSNAETATD
LVVLDRYTSQPCEIVVDCGPFTDRSGLYERLLMELEEALNFINDCNVSVHSKERDSTLIS
KQILSDCRAVLVVLGPWCADKVAGMMVRELQKYIKHEQEELHRRLLLFTDTLLRKIHALC
EEHFSPASLDLKYVTPKVMKLLEILRKYKPYERQQFESVEWYNNRNQDNYVSWSDSEDDD
DDEEIEEKEKPETNFPSPFTNILCGIIFVERRYTAVVLNRLIKEAGKQDPELAYISSNFI
TGHGIGKNQPRSKQMEAEFRKQEEVLRKFRAHETNLLIATSVVEEGVDIPKCNLVVRFDL
PTEYRSYVQSKGRARAPISNYVMLADTDKIQSFEEDLKTYKAIEKILRNKCSKSVDGAEA
DVDAVVDDDDVFPPYVLRPDDGGPRVTINTAIGHVNRYCARLPSDPFTHLAPKCRTQELP
DGTFYSTLYLPINSPLRASIVGPPMGCVRLAERVVALICCEKLHKIGELDEHLMPVGKET
VKYEEELDLHDEEETSVPGRPGSTKRRQCYPKAIPECLRESYPKPDQPCYLYVIGMVLTT
PLPDELNFRRRKLYPPEDTTRCFGILTAKPIPQIPHFPVYTRSGEVTISIELKKSGFTLS
QQMLELITRLHQYIFSHILRLEKPALEFKPTGAESAYCVLPLNVVNDSSTLDIDFTFMED
IEKSEARIGIPSTKYSKETPFVFKLEDYQDAVIIPRYRNFDQPHRFYVADVYTDLTPLSK
FPSPEYETFAEYYKTKYNLDLTNLNQPLLDVDHTSSRLNLLTPRHLNQKGKALPLSSAEK
RKAKWESLQNKQILVPELCAIHPIPASLWRKAVCLPSILYRLHCLLTAEELRAQTASDAG
VGVRSLPADFRYPNLDFGWKKSIDSKSFISTCNSSLAENDNYCKHSTIIVPENAAHQGAT
RTPLENHDQMSVNCRRLLAESPGKLQIEVSTDLTAINGLSYNKNLANGSYDLVNRDFCQG
NQLNYFKQEIPIQPTTSYPIQNLYHYENQPKPSNECTLLSNKYLDGNANTSTSDGSPAVS
SMPAVMNAVRALKGRMDSEQSPSVGYSSRTLGPNPGLILQALTLSNASDGFNLERLEMLG
DSFLKHAITTYLFCTYPDAHEGRLSYMRSKKVSNCNLYRLGKKKGLPSRMVVSIFDPPVN
WLPPGYVVNQDKSNAEKWEKDEMTKDCLLANGKLGKDCEEEEDLTWRAPKEEAEYEDDFL
EYDQEHIQFIDSMLMGSGAFVKKISLSPFSTSDSAYEWKMPKKSSLGSMPFSSDLEDFDY
SSWDAMCYLDPSKAVEEDDFVVGFWNPSEENCGVDTGKQSISYDLHTEQCIADKSIADCV
EALLGCYLTSCGERAAQLFLCSLGLKVLPVIKRTSREKALCPAQENFSQQKSLSGSCAAV
AASPRSSAGKDLEYGCLKIPPRCMFDHPDAEKTLNHLISGFENFERKINYRFKNKAYLLQ
AFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPRQHSPGVLTDLRSALVNNTIF
ASLAVKYDYHKYFKAVSPELFHVIDDFVQFQLEKNEMQGMDSELRRSEEDEEKEEDIEVP
KAMGDIFESLAGAIYMDSGMSLEVVWQVYYPMMRPLIEKFSANVPRSPVRELLEMEPETA
KFSPAERTYDGKVRVTVEVVGKGKFKGVGRSYRIAKSAAARRALRSLKANQPQVPNS
NT seq
5754 nt
NT seq
+upstream
nt +downstream
nt
atgaatgaaaagccctgctttgcagccctcagcatggcaggcctgcagctcatgacccct
gcttcctcaccaatgggtcctttctttggactgccatggcaacaagaagcaattcatgat
aacatttatacgccaagaaaataccaggttgagctgctggaagcagctctggaccataac
accattgtctgcttgaacaccggctcagggaagacgttcatcgcggtcctgctcaccaaa
gagctggcccatcagatcaggggtgacctcaacccacgtgcaaaaagaaccgtgttcctc
gtcaactctgcaaaccaggttgctcaacaagtttcagctgtcagaactcactcagacctc
aaggttggggagtactcaaacctagacgtaaatgcatcttggacaaaagaaagatggagc
caagagttcactaagcaccaggttctcattatgacttgctatgtcgccttgaatgttttg
aaaaatggttacttatcactgtcagacattaaccttttggtgtttgatgagtgtcatctt
gcaattctagaccacccctatcgagaaattatgaagctctgtgaaagttgtccatcatgc
cctcgaattttgggactaactgcttccattttaaatgggaaatgtgatccagaggagttg
gaagaaaagattcagaacctggagaagattcttaagagtaatgctgagactgccactgac
ctggtggtcttagacagatacacttctcagccatgtgagattgtggtagactgtggacca
tttactgacagaagtgggctttatgaaaggctgctgatggaattagaagaagcacttaat
tttatcaatgactgtaatgtatctgtgcattcaaaggaaagagattctactctgatttcc
aagcaaatactctcagactgccgtgcggtgttagttgtcctgggaccctggtgtgcggac
aaagtagctgggatgatggtaagagagctgcagaagtacatcaaacatgagcaagaggag
ctgcacaggaggcttttattgtttacagacactttgctgaggaaaatacatgcactgtgt
gaagagcacttctcacctgcctcacttgacctgaagtatgtaactcctaaagtaatgaaa
ctgctcgagatcctgcgcaaatacaagccctatgagcgacagcagtttgaaagtgttgag
tggtacaataataggaatcaagataattatgtgtcctggagtgattctgaggatgatgat
gacgatgaagaaattgaagaaaaagaaaagccggagacaaattttccttctccatttacc
aatatcttgtgtggaattatttttgtggaaagaagatacacagcagttgtcctcaacaga
ttaataaaggaagctggcaaacaagatccagagctggcttacatcagtagcaactttata
actggacatggcattgggaagaaccagcctcgcagcaaacagatggaagcagagttcaga
aagcaagaggaggtacttaggaaatttcgagcacatgagactaacctgctcattgcaaca
agtgttgtagaagagggtgtggatatccccaagtgcaacttggttgttcgttttgatttg
cctacggagtatcgatcatatgttcagtccaaaggacgagcccgagccccgatctctaat
tatgtgatgttagcagatacagataagattcagagctttgaagaagaccttaagacctac
aaagctatagaaaagatcttaagaaacaagtgttcaaagtcagtggatggtgctgaggct
gacgtggatgccgttgtagatgatgatgatgttttcccaccatatgtattgaggcctgat
gatgggggtccacgggtcacaatcaacactgccattggacacgttaacagatactgtgct
cgattaccaagtgatccgtttactcatctagctcccaaatgtagaacccaagagttgcct
gatggtacattttattcaactctttatcttccgattaactcacctcttcgagcctccatt
gttggtccaccaatgggctgtgtacggttggctgaaagagtggtagctctcatttgctgt
gaaaaactgcacaaaattggtgaactggatgaacatttgatgccagttgggaaagagact
gttaaatatgaagaagagcttgatttacatgatgaagaggaaaccagtgttccaggaaga
ccagggtctacaaagcgaaggcagtgctaccccaaagcaatcccagagtgcttgagggag
agttatcccaaacctgatcagccttgttacctgtatgtgatagggatggtcttaactacc
cccctccctgatgagctcaacttcaggcgacggaaactctacccccctgaggacaccaca
agatgctttgggatcctgacagccaaacccatacctcagattcctcactttcctgtgtat
acacgctctggagaggtcaccatatccattgagctgaagaagtctggtttcacactgtct
caacaaatgctcgagctgattacaagactccaccagtatatattctcacacattcttcgg
cttgaaaaacctgccctagagtttaaacctacaggcgctgagtcagcatactgtgttcta
cctcttaatgttgttaatgactctagcactctggacattgactttacattcatggaggat
attgagaagtctgaagctcgaataggcattcccagcactaagtattcaaaagaaacacca
tttgtttttaagttagaagattaccaagatgcagttatcattccaagataccgaaatttt
gatcagcctcatcgattttatgtagctgatgtgtacactgatcttaccccactcagtaaa
tttccttcccctgagtatgaaacttttgcagaatattataaaacaaagtataaccttgac
ctgaccaatctcaaccagcctctgctggatgtcgaccatacatcttccagacttaacctt
ttgacacctcggcatttgaatcagaaggggaaagcacttcctctcagcagtgctgaaaag
agaaaagccaaatgggaaagtctgcagaacaaacagatactggttccggaactctgtgct
atacatccaatcccagcatcactgtggagaaaagcagtttgtctccccagcatactatat
cgccttcactgccttttgactgcagaggagctaagagctcagacagccagcgatgctggc
gtaggagtcagatcacttcctgcggattttagataccctaacttagacttcgggtggaaa
aaatctattgatagcaagtctttcatctcaacttgtaactcctcgttggctgaaaatgat
aattactgtaagcacagcacaattatagtccctgaaaatgctgcacatcaaggtgctact
agaacccccttagaaaaccatgaccaaatgtctgtgaactgcagaaggctacttgctgag
tcacctggtaagctccaaattgaagtttcaacggatcttacagcaattaatggtctttct
tacaacaaaaatcttgccaatggcagttatgatttagttaacagagacttttgccaagga
aatcagctgaattacttcaagcaggaaatacctatacaaccaactacctcatatcccatt
cagaatttataccattatgagaaccagcccaagcccagcaatgaatgtactctactgagt
aataaataccttgatggaaacgctaacacatctacctcagatggaagccccgcggtgtcc
tcgatgcctgccgtgatgaacgctgtgagagcactcaagggcaggatggactctgagcag
agcccttctgttgggtactcctcaaggactcttggccccaatcctggactgattcttcag
gctttgacactgtcaaatgctagcgatgggtttaacctggagcggcttgagatgcttggc
gactcctttttaaagcatgctatcaccacatatctcttttgcacttaccctgatgctcat
gagggccgcctttcatatatgagaagcaaaaaggtcagcaactgtaacctgtatcgcctt
ggcaagaagaaggggctgcccagccgcatggtagtgtcgatatttgatcctcctgtgaat
tggcttcctcctggttatgtggttaatcaagataaaagtaatgcagagaaatgggaaaag
gatgaaatgacaaaagactgtttgctggctaatggcaaactaggtaaggactgcgaggag
gaggaggacctgacgtggagggctcccaaggaggaggctgagtatgaagacgacttcctg
gagtatgatcaggagcacatccagtttatagacagcatgttaatggggtcaggagccttt
gtgaagaaaatttctctttctcctttttcaacctccgattctgcttatgaatggaaaatg
cccaaaaagtcctccttaggcagtatgccattttcctcagacctcgaggattttgactac
agctcttgggatgcaatgtgctatctggatcctagcaaggccgttgaagaggatgacttt
gtggtgggtttctggaatccatcagaagaaaactgtggcgttgacacagggaagcagtcc
atttcttacgacttgcacacggagcagtgcattgctgacaaaagcatagcagattgtgtg
gaggccctgctgggttgctatttaaccagctgcggtgagagggctgctcagcttttcctc
tgttcgctggggctcaaggtgctcccagtcatcaaaagaaccagccgggaaaaggccctg
tgccctgctcaggagaacttcagccaacaaaagagcctttcagggagctgtgctgccgtc
gctgccagcccacggtcctctgcagggaaagacttggagtacggctgcctgaagatccca
ccaaggtgtatgtttgaccatccagatgcagagaaaaccctgaaccacctgatatctggg
tttgaaaattttgagaggaaaatcaactacagattcaagaataaggcataccttctgcag
gcttttacacatgcctcctaccactacaacactatcactgattgttaccagcgcttagaa
ttcctgggagatgcgattttggactacctcataaccaagcacctttatgaagacccgcgg
cagcattccccaggggtcctgactgacctacgctctgccctggtcaacaacaccatcttt
gcatcgttggctgtgaagtatgactaccacaagtactttaaagctgtctctcctgagctc
ttccatgtcattgacgactttgtgcagtttcagcttgagaagaatgagatgcaagggatg
gactctgagcttagaagatccgaggaggatgaggagaaagaagaggatatcgaagtccct
aaggctatgggggacatttttgagtctcttgctggtgccatttacatggacagtggaatg
tctctggaggtggtctggcaggtgtattatccaatgatgcggccgctcatagaaaagttt
tctgcaaatgtgccccgttctccagtgagagaattgcttgagatggaaccagaaaccgcc
aagtttagcccggcggagagaacttacgatgggaaggtcagagtcaccgtggaagtggtg
ggaaaggggaaatttaaaggtgtcggccggagctacaggatcgcaaagtctgctgcagcg
agaagagccctccgcagcctcaaagctaaccagcctcaggttcctaacagctga
DBGET
integrated database retrieval system
