Phodopus roborovskii (desert hamster): 127231617
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Entry
127231617 CDS
T08852
Symbol
Ddx6
Name
(RefSeq) probable ATP-dependent RNA helicase DDX6
KO
K12614
ATP-dependent RNA helicase DDX6/DHH1 [EC:
5.6.2.7
]
Organism
prob
Phodopus roborovskii (desert hamster)
Pathway
prob03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
prob00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
127231617 (Ddx6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
prob03019
]
127231617 (Ddx6)
03036 Chromosome and associated proteins [BR:
prob03036
]
127231617 (Ddx6)
Enzymes [BR:
prob01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
127231617 (Ddx6)
Messenger RNA biogenesis [BR:
prob03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
127231617 (Ddx6)
mRNA degradation factors
5'-3' decay
Decapping complex
127231617 (Ddx6)
Chromosome and associated proteins [BR:
prob03036
]
Eukaryotic type
Gene silencing
piRNA pathway
127231617 (Ddx6)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
NA-iREase2
Motif
Other DBs
NCBI-GeneID:
127231617
NCBI-ProteinID:
XP_051053234
UniProt:
A0AAU9ZTT7
LinkDB
All DBs
Position
Unknown
AA seq
483 aa
AA seq
DB search
MSTARTENPVIMGLSSQNGQLRGPVKPSGGPGGGGTQTQQQMNQLKNTNTINNGTQQQAQ
SMTATIKPGDDWKKTLKLPPKDLRIKTSDVTSTKGNEFEDYCLKRELLMGIFEMGWEKPS
PIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLERLDLKKDNIQAMVIVPTRELALQV
SQICIQVSKHMGGAKVMATTGGTNLRDDIMRLDDTVHVVIATPGRILDLIKKGVAKVDHV
QMIVLDEADKLLSQDFVQIMEDIILTLPKNRQILLYSATFPLSVQKFMNSHLQKPYEINL
MEELTLKGVTQYYAYVTERQKVHCLNTLFSRLQINQSIIFCNSSQRVELLAKKISQLGYS
CFYIHAKMRQEHRNRVFHDFRNGLCRNLVCTDLFTRGIDIQAVNVVINFDFPKLAETYLH
RIGRSGRFGHLGLAINLITYDDRFNLKSIEEQLGTEIKPIPSNIDKSLYVAEYHSEPVEE
EKP
NT seq
1452 nt
NT seq
+upstream
nt +downstream
nt
atgagcacggccagaacagagaaccctgttataatgggtctgtccagtcagaatggtcag
ctgaggggccctgtaaagcccagtggtggccctggaggagggggcacacagacacagcaa
cagatgaaccagttgaaaaacaccaacacaatcaataatggcactcaacagcaagcacag
agcatgacggccactattaaacctggtgatgactggaaaaagactttgaaactccctcca
aaggatctaagaatcaaaacttcggatgtgacctccacaaaaggaaatgagtttgaagat
tactgtttgaaacgggagttgctaatgggaatttttgaaatgggctgggaaaaaccatct
cctattcaggaggagagcattcccattgctttatctggtagggatatcttagctagagca
aaaaatggaacaggcaaaagcggtgcctacctcattcccttacttgaacggctggacctg
aagaaggacaatattcaagcaatggtgattgttcccactagagaacttgctctacaggtc
agtcaaatttgcatccaggtcagcaaacacatgggaggagccaaagtgatggcaaccaca
ggaggaaccaatttacgggatgacataatgaggcttgatgatacagtgcatgtggtgatt
gctacccctggcagaatcctggatctgatcaagaaaggagtagcaaaggttgaccatgtc
cagatgatagtattggatgaggcagataagttgttgtcacaggattttgtgcagataatg
gaggatattattctcacactacctaaaaataggcagattttactatattccgctactttc
cctcttagtgtacaaaagtttatgaattcccatctgcaaaaaccctatgagattaacctg
atggaggaactaactctgaagggagtaacccagtactacgcatatgtaactgagcgccaa
aaagtacactgcctcaacacacttttctccaggcttcagataaaccagtcgatcattttc
tgcaactcttctcaaagagttgaattactggccaagaagatttctcagctgggttactct
tgcttctatatccatgctaaaatgaggcaggaacatcgaaatcgtgtctttcatgatttc
cgaaatggcttatgccgcaatcttgtttgcactgatttgtttacccgaggtattgatata
caagctgtgaatgtggtgataaactttgacttcccaaagctggcagagacctatcttcat
cgtattggaagatcaggtcgctttggtcatcttggcttagccatcaacttgatcacatat
gatgatcgcttcaacctgaaaagtattgaagagcaactgggaacagagattaaacctatc
ccaagcaacatcgacaagagcctgtatgtggcagaataccacagtgagcctgtagaagaa
gaaaaaccctaa
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