Phodopus roborovskii (desert hamster): 127232213
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Entry
127232213 CDS
T08852
Symbol
Nup54
Name
(RefSeq) nucleoporin p54 isoform X1
KO
K14308
nuclear pore complex protein Nup54
Organism
prob
Phodopus roborovskii (desert hamster)
Pathway
prob03013
Nucleocytoplasmic transport
prob05014
Amyotrophic lateral sclerosis
Brite
KEGG Orthology (KO) [BR:
prob00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
127232213 (Nup54)
09160 Human Diseases
09164 Neurodegenerative disease
05014 Amyotrophic lateral sclerosis
127232213 (Nup54)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
prob03019
]
127232213 (Nup54)
Messenger RNA biogenesis [BR:
prob03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
127232213 (Nup54)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Nup54
Nup54_C
XhlA
Motif
Other DBs
NCBI-GeneID:
127232213
NCBI-ProteinID:
XP_051054166
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All DBs
Position
Unknown
AA seq
564 aa
AA seq
DB search
MAFNFGAPSGTSGTSAATAAPAGFGGLETANSTAGGFNFGGFGLTANPAVNFNIGNFGVS
TTSATPFNFGNSLTSAGGFGGFGTTTTTAGSAFSFSAPTNTGSTGLLGGTQNKGFGFGTG
FGTTTGTGTGLGTGLGTGLGFGGFNTQPQQQQQQTTLGGLFSQPTQAPAQSNQLINTASA
LSAPTLLGDERDAILAKWNQLQAFWGTGKGYFNNNIPPVEFTQENPFCRFKAVGYSCMPN
NKDEDGLVVLVFNKKEADIRSQQQQLVESLHKVLGGNQTLTVNVEGIKTLPDDQTEVVIY
VVERSPNGTSRRVPATTLYAHFEQANIKTQLQQLGVTLSMTRTELSPAQIKQLLQNPPAG
VDPIIWEQAKVDNPDSEKLIPVPMVGFKELLRRLKVQDQMTKQHQTRLDIISEDISELQK
NQTTTMAKIAQYKRKLMDLSHRTLQVLIKQEIQRKSGYAIQADEEQLRVQLDTIQGELNA
PTQFKGRLNELMSQIRMQNHFGAVKSEERYYIDADLLREIKQHLKQQQEGLSHLISIIKD
DLEDIKLVEHGLNETIHSRGGVFS
NT seq
1695 nt
NT seq
+upstream
nt +downstream
nt
atggctttcaattttggggctccttcgggcacttcgggcacctctgcagctaccgcggca
cccgcgggatttggtgggcttgagactgccaactccaccgccggtggttttaattttggg
ggtttcggattaactgctaaccctgcagtgaactttaatattgggaatttcggtgtgtct
accacctcggcgactccattcaattttggtaacagtctgacgagtgcaggtgggtttgga
ggatttggaacaacaactacaactgcaggttctgcattcagcttttctgccccaacaaac
acaggcagtacaggccttcttggtggcactcagaacaaaggttttggctttggtactggt
ttcggcacaacgacaggaactggtactggtttaggtactggtttgggaaccggcctggga
tttggaggatttaatacacagccgcagcagcagcagcagcagactactctaggtggtctc
ttcagtcagcctacacaggctcctgcccaatccaaccagctgatcaatactgccagtgcc
ctttctgctccaacgttactgggagatgagagagatgccattttggcaaagtggaaccag
cttcaggctttctggggaacaggaaagggctatttcaacaataacatccctcccgtggag
tttacacaggaaaaccccttttgccgatttaaggctgtaggttatagttgtatgcccaat
aataaagatgaagatggactagtggtcttagttttcaacaaaaaggaagcagatattaga
agccaacaacaacagctggtagaatcattgcataaggttttgggaggaaaccagaccctt
actgtcaatgtggaaggcattaagacactgccagatgatcagacagaagttgtcatttat
gttgttgagcgttctccaaatggcacctcgagaagggttccagcaacaaccctgtatgcc
cactttgagcaagctaacattaaaacacagctgcagcaacttggggtgacactttctatg
accagaacagaactgtcccctgctcagatcaaacagctcttgcagaaccctcctgcaggt
gttgatcctattatttgggaacaagccaaggtggataaccccgattctgaaaaattaatc
ccagtgccaatggtgggcttcaaagaactgcttcgaagactgaaggttcaagaccagatg
accaagcagcatcagaccagattggatatcatatctgaagatatcagtgagctacaaaag
aatcaaactacaactatggccaaaatagcacagtacaagaggaagctcatggatctctcc
cacagaaccttacaggtcctaattaaacaggagattcaaaggaagagtggctacgccatc
caggctgacgaagaacagcttcgggttcagctggacactatccagggggaactgaatgca
cctactcagttcaaaggtcgactaaatgaactgatgtcccagatccggatgcagaatcat
tttggagctgttaaatctgaagaaaggtattacatagatgcagacctgttacgggagatt
aagcagcatttgaaacaacaacaagaaggcctcagccacttgattagcatcataaaagat
gacctagaagatataaaactggtagaacatggattgaatgaaaccatccatagcagaggc
ggtgtctttagctga
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