Phodopus roborovskii (desert hamster): 127233320
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Entry
127233320 CDS
T08852
Symbol
Trpa1
Name
(RefSeq) transient receptor potential cation channel subfamily A member 1
KO
K04984
transient receptor potential cation channel subfamily A member 1
Organism
prob
Phodopus roborovskii (desert hamster)
Pathway
prob04750
Inflammatory mediator regulation of TRP channels
Brite
KEGG Orthology (KO) [BR:
prob00001
]
09150 Organismal Systems
09157 Sensory system
04750 Inflammatory mediator regulation of TRP channels
127233320 (Trpa1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
prob04040
]
127233320 (Trpa1)
Ion channels [BR:
prob04040
]
Voltage-gated cation channels
Transient receptor potential channel (TRP)
127233320 (Trpa1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Ank_2
Ank
Ank_3
Ank_4
Ank_5
Ion_trans
ANK_LRRK2
Acetate_kinase
DUF7694
Motif
Other DBs
NCBI-GeneID:
127233320
NCBI-ProteinID:
XP_051055706
LinkDB
All DBs
Position
Unknown
AA seq
1124 aa
AA seq
DB search
MKCSLKRMLRPEERKELQGVVYRGVQEDMDHSKDSFKVDIEGDTYRLEDFMKNRRKLSKY
EDENVSPLHHAAAEGQVELMKMIIHGSSCEVLNIMDSSGNTPLHWAAEKNQVESVKFLLS
QGANPNLRNNNMMAPLHIAVQASYNDLTKVLTEHNTTNINLEGENGNTALMSACTKDNSE
SLQILLEKGAKLCKSNKWGDYPVHQAAFSGAKKCMELILKYGEEHGYKRELHINFVNHKK
ASPLHLAVQSGDLDMIKMCLDNGAHIDMIENGKCMALHFAATQGATDIVKLMISSYTGSS
DIVNAVDGNHETLLHRASLFDHHDLADYLISVGADINSTDSEGRSPLILATASASWNIVN
LLLSKGAKVDIKDHLGRNFLHLTVQQPYGLRNLQPEFMQMQHIKELVMDEDNDGCTPLHY
ACRQGVPISVNNLLGFNVSIHSKSKDKKSPLHFAASYGRINTCQRLLQDISDTRLLNEGD
LHGMTPLHLAAKNGHDKVVQLLLKKGALFLSDHNGWTALHHASMGGYTQTMKVILDTNLK
CTDRLDEEGNTALHFAAREGHAKAVAMLLSYNADIVLNKQQASFLHIALHNKRKEVVLTT
IRSKRWDECLQVFSHYSPSNRCPITEMVEYLPECMKVLLDFCMIPSTEDKSCQDYHIEYN
FRYLQCPLSLTKKITPTQDVVYEPLTILNVMVQHNRIELLNHPVCKEYLLMKWCAYGFRA
HMMNLGSYCLGLIPMTLLVVKIKPGMAFNSTGIINETSNHLETVDTLNSFPIKICMILVF
LSSIFGYCKEVVQIFQQKRNYFLDYNNALEWVIYTTSIVFVLPLFLNIPAYMQWQCGAIA
IFFYWMNFLLYLQRFENCGIFIVMLEVIFKTLLRSTGVFIFLLLAFSLSFYVLLNFQEAF
SSPLLSLIQTFSMMLGDINYRDAFLEPFLRKELAYPILTFGQLIAFTMFVPIVLMNLLIG
LAVGDIAEVQKHASLKRIAMQVELHTNLEKKLPLWYLRKVDQKSTVVYPNRPRHGRMLRF
FHYFLCTQETRQEVPNTDMCLEMEILKQKYRLKDLTSLLEKQHELIKLIIQKMEIISETE
DEDNHCSFQDKFKKERLEQMHSKWNFVLNAVKTKAHLSISHPDL
NT seq
3375 nt
NT seq
+upstream
nt +downstream
nt
atgaagtgcagcctgaagagaatgctgcgccctgaggagagaaaggagctccagggcgtt
gtctatcggggcgtacaggaagacatggaccactccaaggactcctttaaggtggacatt
gaaggagatacgtatagattagaagactttatgaagaaccgaagaaagctaagcaaatat
gaggatgaaaatgtctcccctttgcatcatgcagcagcagaaggtcaagttgaactcatg
aagatgatcatccacggttcttcctgtgaagtgctgaatataatggatagtagtggaaat
accccactacactgggctgccgaaaaaaaccaagttgaaagtgtgaagtttcttcttagc
caaggagcaaatccaaacctccgaaacaacaacatgatggcacctcttcacatagctgtg
caggcctcctacaatgacctgaccaaggtcttgactgagcacaacaccactaacatcaac
ttagaaggagagaatggaaacacagctttgatgtctgcgtgtaccaaggacaacagtgaa
tctttgcagatactgttagaaaagggagctaagctgtgtaaatcaaataaatggggagat
taccccgttcaccaggctgcattttccggtgccaaaaaatgcatggaattgatactaaag
tatggtgaagaacacggctacaaaagggagctacatattaactttgtgaatcataaaaaa
gccagcccactccacctcgcagtccaaagtggtgatttggacatgattaaaatgtgcctg
gacaatggggcacacatcgacatgatagagaacggcaaatgcatggccctccactttgct
gctacccaaggagccactgacatcgttaaactcatgatctcatcctataccggaagcagt
gacattgtgaacgcagttgatggcaaccatgagaccctgcttcacagagcctcattgttt
gatcaccatgacctggcagactacttaatttcagtgggagcagacatcaacagcacagat
tcagaaggacgctctcctcttattttagctactgcatctgcatcttggaatattgtgaat
ttgctcctctctaaaggtgccaaagtagacataaaagatcatctggggcgcaacttttta
cacttgactgtacaacagccttatggactaagaaatttgcagccagagtttatgcagatg
cagcatattaaggagctggtgatggatgaagacaatgacgggtgtactcctctccactat
gcgtgcaggcagggggtccccatctctgtaaacaacctccttggcttcaatgtgtccatt
cattccaaaagcaaagacaagaaatcacccctgcattttgcagccagctatggacgcatc
aatacatgtcagaggcttctacaagacataagtgacacaaggcttttgaacgagggggat
ctccatggaatgacccctcttcacctggcagcgaagaatgggcatgataaagttgttcaa
cttcttctgaagaaaggggcattgttcctcagtgaccacaatggatggacggctttgcat
catgcatccatgggtgggtacactcagaccatgaaagtcattcttgacactaacttgaag
tgtaccgatcggctagatgaagaagggaacacagcgctccactttgcagctcgggaaggc
catgccaaggctgttgcgatgcttctgagctacaatgccgacatcgtcctgaacaagcag
caagcctcctttttacatattgcactgcacaataaacggaaggaagtggttctcacaacc
atcaggagtaaaagatgggatgagtgtcttcaagttttcagtcattattctccaagcaat
agatgtccaattacagaaatggtagaatacctccccgagtgcatgaaagttcttttagat
ttctgcatgataccttccacagaggacaagtcctgccaagactatcatattgagtataat
ttcagatatcttcagtgcccactatcattgaccaaaaaaataacacctacccaggatgtg
gtatacgagcctcttacaatactcaatgtcatggtacagcataaccgcatagagcttctc
aaccaccctgtgtgcaaggaatacttactcatgaaatggtgtgcttatggattcagagcc
catatgatgaacctgggatcttattgccttggtctaatacccatgaccctgctcgttgtc
aaaataaagcctggaatggccttcaactccactgggataatcaatgaaactagtaatcat
ttggaaacagtagacactctgaactcatttccaataaaaatatgtatgattctagtattt
ttatcaagtatatttggatattgcaaagaagtggtccaaattttccaacagaaaaggaat
tacttcctagattacaacaatgctctagaatgggtcatctacacaaccagcatcgtcttt
gtattgcccttgtttctcaacatcccagcatatatgcagtggcaatgtggagcaatagca
atattcttctactggatgaacttcctactgtatcttcaaaggtttgagaactgtggaatt
ttcattgttatgttggaggtgatttttaaaacattgttgagatcgacaggcgtgtttatc
ttcctcctcttggcctttagcctcagcttttacgtcctcctgaattttcaagaagccttc
agctctccgttgctttccttaatccagactttcagtatgatgctaggagacattaactat
cgtgatgccttcctagaaccattcttaagaaaggaattggcatatccaatcctgaccttt
gggcaacttatcgccttcacaatgtttgtcccgattgttctcatgaatttactaattggt
ttagcagttggagacattgctgaggtccagaagcatgcatcattgaagaggattgctatg
caggtggaacttcataccaatttggagaaaaagctgccactgtggtacctacgcaaagta
gatcagaagtccaccgttgtgtatccgaacagacccaggcatggcaggatgttacgattt
ttccattactttctttgtacacaagaaacacggcaagaagtaccaaacacggacatgtgt
ttggaaatggaaatattgaaacagaaatacagactgaaggacctcacatctctcttggaa
aagcagcatgaactcatcaaactcatcatccagaagatggaaatcatctcagagacagaa
gatgaagataaccattgctctttccaggacaagttcaaaaaggagcggctagaacagatg
catagcaaatggaactttgtgctgaatgcagttaagaccaaagcacacctaagtattagt
cacccagacctttag
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