Phodopus roborovskii (desert hamster): 127233393
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Entry
127233393 CDS
T08852
Symbol
Smarca2
Name
(RefSeq) probable global transcription activator SNF2L2 isoform X1
KO
K11647
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2/4 [EC:5.6.2.-]
Organism
prob
Phodopus roborovskii (desert hamster)
Pathway
prob03082
ATP-dependent chromatin remodeling
prob04714
Thermogenesis
prob05225
Hepatocellular carcinoma
Brite
KEGG Orthology (KO) [BR:
prob00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
127233393 (Smarca2)
09150 Organismal Systems
09159 Environmental adaptation
04714 Thermogenesis
127233393 (Smarca2)
09160 Human Diseases
09162 Cancer: specific types
05225 Hepatocellular carcinoma
127233393 (Smarca2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
prob03021
]
127233393 (Smarca2)
03036 Chromosome and associated proteins [BR:
prob03036
]
127233393 (Smarca2)
Transcription machinery [BR:
prob03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
127233393 (Smarca2)
Chromosome and associated proteins [BR:
prob03036
]
Eukaryotic type
Histone modification proteins
HDAC complexes
REST complex
127233393 (Smarca2)
Chromatin remodeling factors
BAF complex
127233393 (Smarca2)
PBAF complex
127233393 (Smarca2)
GBAF(ncBAF) complex
127233393 (Smarca2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
SnAC
Bromodomain
HSA
BRK
QLQ
ResIII
HDA2-3
DEAD
Motif
Other DBs
NCBI-GeneID:
127233393
NCBI-ProteinID:
XP_051055796
LinkDB
All DBs
Position
Unknown
AA seq
1602 aa
AA seq
DB search
MSTPTDPAAMPHPGPSPGPGPSPGPILGPSPGPGPSPGSVHSMMGPSPGPPSVSHPMSTM
GSADFPQEGMHQMHKPMDGIHDKGAVDDVHCGSMKGTSMRPPHPGMGPPQSPMDQHSQGY
MSPHLSPLGAPEHVSSPISGGGPTPPQMPPSQPGPLIPGDLQAMNQPNRGPSPFSPVQLH
QLRAQILAYKMLARGQPLPETLQLAVQGKRTLPGMQQQQQQQQQQQQQPQQQQQQPQQPQ
QQQQQPQQQQPALVSYNRPSGPGQELLLSGQSTPQKLSAPAPSGRPSPAPPTTAQPTATA
VPGPSVQQPAPGQPSPVLQLQQKQSRISPIQKPQGLDPVEILQEREYRLQARIAHRIQEL
ESLPGSLPPDLRTKATVELKALRLLNFQRQLRQEVVACMRRDTTLETALNSKAYKRSKRQ
TLREARMTEKLEKQQKIEQERKRRQKHQEYLNSILQHAKDFKEYHRSVAGKIQKLSKAVA
TWHANTEREQKKETERIEKERMRRLMAEDEEGYRKLIDQKKDRRLAYLLQQTDEYVANLT
NLVWEHKQAQAAKEKKKRRRRRKKAEENAEGGESALGPDGEPIDESSQMSDLPVKVTHTE
TGKVLFGPEAPKASQLDAWLEMNPGYEVAPRSDSEESDSDYEEEDEEEESSRQETEEKIL
LDPNSEEVSEKDAKQIIETAKQDVDDEYSMQYSARGSQSYYTVAHAISERVEKQSALLIN
GTLKHYQLQGLEWMVSLYNNNLNGILADEMGLGKTIQTIALITYLMEHKRLNGPYLIIVP
LSTLSNWTYEFDKWAPSVVKISYKGTPAMRRSLVPQLRSGKFNVLLTTYEYIIKDKHILA
KIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRILLTGTPLQNKLPELWALLNFLLPT
IFKSCSTFEQWFNAPFAMTGERVDLNEEETILIIRRLHKVLRPFLLRRLKKEVESQLPEK
VEYVIKCDMSALQKILYRHMQAKGILLTDGSEKDKKGKGGAKTLMNTIMQLRKICNHPYM
FQHIEESFAEHLGYSNGVINGAELYRASGKFELLDRILPKLRATNHRVLLFCQMTSLMTI
MEDYFAFRNFLYLRLDGTTKSEDRAALLKKFNEPGSQYFIFLLSTRAGGLGLNLQAADTV
VIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQA
GMFDQKSSSHERRAFLQAILEHEEENEEEDEVPDDETLNQMIARREEEFDLFMRMDMDRR
REDARNPKRKPRLMEEDELPSWIIKDDAEVERLTCEEEEEKIFGRGSRQRRDVDYSDALT
EKQWLRAIEDGNLEEMEEEVRLKKRKRRRNVDKDPVKEDVEKAKKRRGRPPAEKLSPNPP
KLTKQMNAIIDTVINYKDRCNVEKVPCNSQLEIEGNRSGPALYPHVSKHSSGRQLSEVFI
QLPSRKELPEYYELIRKPVDFKKIKERIRNHKYRSLGDLEKDVMLLCHNAQTFNLEGSQI
YEDSIVLQSVFKSARQKIAKEEESEEESNEEEEEDDEEESESEAKSVKVKIKLNKKEEKG
RDTGKGKKRPNRGKAKPVVSDFDSDEEQDENEQSEASGTDDE
NT seq
4809 nt
NT seq
+upstream
nt +downstream
nt
atgtccacacccacagacccagctgcaatgccccatcctgggccctccccggggcctgga
ccttctcctggaccaattctggggcctagtccaggaccaggaccatccccaggttcagtc
cacagcatgatggggcccagtcctggaccccccagtgtctcacatcctatgtcaacaatg
ggctctgcagacttcccacaggaaggcatgcaccagatgcataagcccatggacgggata
cacgacaagggggctgtagacgatgtccactgtggatccatgaagggcaccagcatgcgc
ccaccacacccaggaatgggccctccacagagcccgatggatcagcacagccaaggttat
atgtcaccacatctctctcctttgggagccccagagcacgtctccagccctatatctgga
ggaggtccaaccccacctcagatgccaccgagccagccagggccactcatcccaggagat
ctgcaggccatgaaccagcctaacagaggtccctcgcctttcagtcctgtccagctgcat
cagcttcgagctcagattttagcttacaaaatgttggccaggggccagcccctccctgaa
acactgcagcttgcagtccaggggaaaaggaccttgcctggcatgcagcagcagcagcag
cagcagcagcaacagcaacagcagcctcagcagcaacagcagcagccccagcagcctcag
cagcaacagcagcagcctcagcagcagcagccagcccttgttagctacaacagaccatct
ggccctgggcaggagctgctgctgagtggccagagcaccccgcagaagctgtcagcacca
gcacccagcggccggccgtcgcctgcacccccaaccactgcccagcccacggccacagct
gtgcccgggccttcagtgcagcagcctgccccagggcagccgtctccggtcctgcagtta
cagcagaagcagagccgtatcagcccaatccagaaaccgcaaggcctcgaccccgtggag
atcctgcaggagcgagagtacagactgcaggctcgcatagctcataggatacaagaactg
gaaagtctgcctggctctttgccaccagatttacgaaccaaagcaactgtggaactaaaa
gcacttcgcttactcaatttccaacgtcagctgagacaggaggtggtggcctgcatgcgg
agggacaccaccctggagacggctctcaactccaaagcatacaagcggagcaagcgccag
accctgcgggaggcgcgtatgacagagaaactggaaaagcagcagaagatagaacaggag
aggaaacgacggcagaagcaccaggaatacctgaacagtattttgcaacatgcgaaagat
tttaaggaatatcaccggtctgtggctgggaagatccagaagctgtccaaagctgtggcg
acttggcatgctaacactgaaagggagcaaaagaaggagacggagcggatcgagaaggag
agaatgcggaggttgatggctgaagatgaggaaggctacaggaaactcattgaccaaaag
aaagacagacgcttagcgtaccttttgcagcagaccgatgagtatgtggccaacctgacc
aacctggtttgggagcacaagcaggcccaagctgccaaagagaagaagaaaaggaggcgg
cggcgaaagaaggctgaagagaatgcagagggcggggagtctgccctgggaccagatgga
gagccaatagatgaaagcagccagatgagtgacctgcctgtcaaagtgacacacacagag
actggcaaggtcctctttggacctgaagcacccaaagcaagtcagctggatgcctggctg
gagatgaatcctggttatgaagttgctcccagatctgacagcgaagagagtgactctgat
tacgaggaagaggatgaagaagaagagtctagtaggcaggaaacagaggagaagatcctg
ctggatccaaacagtgaagaagtttctgaaaaggacgccaagcagatcattgagactgca
aagcaggacgtggatgatgaatacagcatgcagtacagtgccagagggtcacagtcctac
tacacagtggcccacgccatctccgagagggtagagaaacagtctgccctcctcattaac
gggaccctaaagcattaccagctccagggcctggaatggatggtttccctgtataataac
aatttgaatggaatcttagctgatgaaatggggctaggcaagaccatccagaccattgca
ctcatcacatatctgatggagcacaaaagactcaatggcccctacctcatcattgttccc
ctctcgactctatctaactggacatatgaatttgacaaatgggctccttctgtggtgaaa
atttcttacaagggtacccctgccatgcgacgctcccttgttccccagctacggagtggc
aaattcaatgtcctcctgactacttatgaatacattataaaagacaagcacattcttgca
aagattcggtggaaatacatgatcgtggacgaaggccaccggatgaagaatcaccattgc
aagctgactcaggtcttgaacacacactatgtcgcccccagaaggatccttttgactggg
accccgctacagaataagctccctgaactctgggccctcctcaacttccttctccctaca
atcttcaagagttgcagcacattcgagcagtggtttaatgctccatttgccatgacaggc
gaaagggtggacttgaatgaagaagaaactatcttgatcatcaggcgtctgcacaaggtg
ttgagaccctttttactgaggagactgaagaaagaggttgaatctcagcttccagaaaag
gttgaatatgtgatcaagtgcgacatgtcagctctgcagaagattctgtatcgtcatatg
caggccaaggggatcctcctcacagatggttctgagaaagataagaaggggaaaggaggt
gccaagacgcttatgaacacgatcatgcagctgagaaaaatttgcaaccacccatatatg
tttcagcacattgaggaatcctttgctgaacacctgggctattcaaatggggtcatcaat
ggggctgagctgtatcgggcctcaggaaagtttgagctacttgatcgtattctgcccaaa
ttgagagcgactaaccaccgcgtgctgcttttctgccagatgacgtctctcatgaccatc
atggaggattactttgcttttcggaacttcctttacctacgccttgatggcaccaccaag
tctgaagatcgagctgctttgctgaagaaattcaatgaacctgggtcccagtattttatt
ttcttgctgagcacacgagctgggggcctgggcttaaatcttcaggccgctgacacagtg
gtcatctttgacagcgactggaatcctcatcaggatctgcaggcccaagatcgagctcac
cgtatcggccaacaaaacgaggttcgggttctgaggctctgcactgtcaacagtgtcgaa
gaaaagattctcgcagctgcgaaatacaagctgaatgtggatcagaaggttatccaggcg
ggcatgtttgatcagaagtcatctagccacgagcggagagcattcctgcaggccatattg
gagcatgaagaggagaacgaggaagaagatgaagtaccagatgacgagaccctgaaccag
atgattgctcgccgggaagaagagtttgatctttttatgcgcatggacatggaccggcgc
agggaagatgccagaaatccaaagcgcaagcctcgcctgatggaggaagatgagctgccc
tcctggattattaaggatgacgccgaagtggaaaggctcacgtgtgaagaagaggaggag
aagatatttggcaggggttcgcgccagcgccgggatgtggactacagcgacgccctcacg
gagaagcagtggctccgggccatcgaagacggcaatttggaagaaatggaagaggaagtt
cggctcaagaagagaaaaagacgaagaaatgtggataaagatcctgtgaaggaagacgtg
gaaaaggccaagaagagaagaggccgccctccagccgagaaactgtcgccaaatccccca
aaactgacgaagcagatgaacgccatcatcgatactgtgataaactacaaagataggtgt
aacgtggagaaggtgccctgtaattctcagttggaaatagaaggaaacaggtcaggacct
gccttgtatccccatgtctctaaacacagttcagggcgacagctcagtgaagtcttcatt
cagttaccttccaggaaagagttaccagaatactatgaattaattaggaagccagtggat
ttcaaaaagataaaggaaagaattcgtaatcataagtaccggagcctgggtgacctggag
aaagatgtcatgcttctctgtcacaacgcacagacattcaacttggaaggatcccagatc
tatgaagactccatcgtcctacagtcggtatttaagagtgctcggcagaaaatcgccaaa
gaagaagagagtgaggaagaaagcaatgaagaggaggaggaagatgatgaagaggagtcc
gagtcagaggcaaaatctgtgaaggtgaaaatcaagctcaataaaaaagaagagaaaggc
cgggacacagggaaaggcaagaaaaggccaaaccgaggcaaagccaaacccgtcgtgagc
gattttgacagcgacgaggaacaggatgagaacgaacagtcagaggcaagcgggactgat
gatgagtga
DBGET
integrated database retrieval system
