Phodopus roborovskii (desert hamster): 127234494
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Entry
127234494 CDS
T08852
Symbol
Vps4a
Name
(RefSeq) vacuolar protein sorting-associated protein 4A
KO
K12196
vacuolar protein-sorting-associated protein 4
Organism
prob
Phodopus roborovskii (desert hamster)
Pathway
prob03250
Viral life cycle - HIV-1
prob03272
Virion - Hepatitis viruses
prob04144
Endocytosis
prob04217
Necroptosis
Brite
KEGG Orthology (KO) [BR:
prob00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
127234494 (Vps4a)
03272 Virion - Hepatitis viruses
127234494 (Vps4a)
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
127234494 (Vps4a)
09143 Cell growth and death
04217 Necroptosis
127234494 (Vps4a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
prob04131
]
127234494 (Vps4a)
03400 DNA repair and recombination proteins [BR:
prob03400
]
127234494 (Vps4a)
Membrane trafficking [BR:
prob04131
]
Endosome - Lysosome transport
Endosomal sorting complexes required for transport (ESCRT)
ESCRT-III complex
127234494 (Vps4a)
DNA repair and recombination proteins [BR:
prob03400
]
Eukaryotic type
Check point factors
Other check point factors
127234494 (Vps4a)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
AAA
Vps4_C
MIT
AAA_lid_3
TIP49
AAA_16
AAA_22
AAA_14
AAA_5
RuvB_N
IstB_IS21
AAA_25
DUF815
AAA_2
AAA_18
NPHP3_N
AAA_17
AAA_33
nSTAND3
RNA_helicase
AAA_24
PhoH
ResIII
AAA_28
Mg_chelatase
AAA_7
NACHT
Parvo_NS1
YhdB
bpMoxR
AAA_30
TPR_2
Motif
Other DBs
NCBI-GeneID:
127234494
NCBI-ProteinID:
XP_051057421
LinkDB
All DBs
Position
Unknown
AA seq
437 aa
AA seq
DB search
MTTSTLQKAIDLVTKATEEDKAKNYEEALRLYQHAVEYFLHAIKYEAHSDKAKESIRAKC
MQYLDRAEKLKDYLRNKEKHGKKPVKENQSEGKGSDSDSEGDNPEKKKLQEQLMGAVVME
KPNIRWNDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAV
ATEANNSTFFSVSSSDLMSKWLGESEKLVKNLFELARQHKPSIIFIDEVDSLCGSRNENE
SEAARRIKTEFLVQMQGVGNNNDGTLVLGATNIPWVLDSAIRRRFEKRIYIPLPEEAARA
QMFRLHLGSTPHNLTDANIHELARKTEGYSGADISIIVRDSLMQPVRKVQSATHFKKVSG
PSRTNPSVVIDDLLTPCSPGDPGAIEMTWMDVPGDKLLEPVVCMWDMLRSLATTRPTVNA
EDLLKVKKFSEDFGQES
NT seq
1314 nt
NT seq
+upstream
nt +downstream
nt
atgacaacgtcaaccctccagaaagccatcgatctggtgacgaaagccacagaagaggac
aaagccaagaactacgaggaggcactccggctctaccagcatgctgtggagtatttcctt
catgccatcaaatatgaagcacacagtgacaaggccaaggagagtattcgagcaaagtgc
atgcagtacctagaccgagcagagaagctgaaagattatttacgaaacaaagaaaaacat
ggcaagaagccagtcaaagaaaatcagagtgagggcaagggtagcgacagtgacagtgaa
ggggataacccagagaaaaagaaattacaagaacagttgatgggtgctgttgtgatggag
aaacccaacatacggtggaatgatgtggctggtctagagggggctaaagaggctctcaaa
gaagctgtcattttgccaattaaattcccacatttattcacaggcaagcgcaccccttgg
cgaggtatactgctctttgggcccccaggcacaggcaagtcctacctggccaaagctgtg
gcaacagaagccaacaactccaccttcttctctgtgtcttcctcggatctgatgtctaag
tggttgggggagagtgagaagctagtcaagaacctgtttgagttggccaggcaacacaag
ccttccatcatcttcattgatgaggtggattccctctgcgggtcacggaatgaaaatgag
agcgaagctgcccgcaggatcaaaacggagttcttagtccagatgcagggagtagggaat
aacaatgatgggactcttgttcttggtgccacaaacatcccctgggtgttggattcagcc
attaggaggaggtttgaaaagcgaatttatatcccattgccagaggaagcagcccgggct
cagatgtttcggttacatctgggaagcacacctcacaacctcacggatgctaacatccac
gagctggcccggaagacagaaggctactcaggagctgacatcagtatcatcgtgcgggac
tccctcatgcagccagttagaaaagtacagtcagcaacacacttcaagaaggtttctggc
ccttctcgcaccaaccctagtgttgtgattgatgatcttctgaccccatgttctccaggg
gacccaggggccatagagatgacttggatggatgtccctggtgataaactcttagagcct
gtggtttgcatgtgggacatgctgcggtctttagccactacccggcccacggtgaatgca
gaggacctcctgaaagtgaagaagttctctgaggactttggacaggagagttaa
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