Phodopus roborovskii (desert hamster): 127234653
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Entry
127234653 CDS
T08852
Symbol
Edc4
Name
(RefSeq) enhancer of mRNA-decapping protein 4 isoform X1
KO
K12616
enhancer of mRNA-decapping protein 4
Organism
prob
Phodopus roborovskii (desert hamster)
Pathway
prob03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
prob00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
127234653 (Edc4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
prob03019
]
127234653 (Edc4)
Messenger RNA biogenesis [BR:
prob03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
127234653 (Edc4)
mRNA degradation factors
5'-3' decay
Decapping complex
127234653 (Edc4)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Ge1_WD40
EDC4_C
WD40
WD40_WDHD1_1st
Beta-prop_EDC4L
Beta-prop_TEP1_2nd
WD40_CDC20-Fz
WD40_Prp19
DUF445
Beta-prop_HPS5
WDR55
Motif
Other DBs
NCBI-GeneID:
127234653
NCBI-ProteinID:
XP_051057672
LinkDB
All DBs
Position
Unknown
AA seq
1412 aa
AA seq
DB search
MASCASIDIEDATQHLRDILKLDRPAGGSNAESQRPSSAYNGDLNGLLVPDPLSSGDGNS
TSKPGARTMPPINLQEKQVICLSGDDSSTCIGILAKEVEIVASSDSSISSKARGSNKVKI
QPVAKYDWEQKYYYGNLIAVSNSFLAYAIRAANNGSAMVRVISVSTSERTLLKGFTGSVA
DLAFAHLNSPQLACLDEAGNLFVWRLALVKGKIQEEILVHIRQPEGTPLNHFRRIIWCPF
IPEESEDCCEESSPTVALLHEDRAEVWDLDMLRASHNAWPVDASQIKQGFIVVKGHSTCL
SEGALSPDGTVLATASHDGFVKFWQIYIEGQDEPRCLHEWKPHDGRPLSCLLFCDNHKKQ
DPEVPFWRFLITGADQNRELKMWCTVSWTCLQTIRFSPDIFSSVSVPPSLKVCLDLSAEY
LILSDVQRKVLYVMELLQNQDEGRACFSSISEFLLTHPVLSFGIQVVSRCRLRHTEVLPA
EEENDSLGAESSHGASAMESAAGVLIKLFCVHTKALQDVQIRFQPQLNPDVVAPLPTHTA
HEDFTFPTAFGESRPELGSEGLASAAHGSQPDLRRIVELPAPADFLSLSSETKPKLMTPD
AFMTPTASLQQISASPSSSSSSSSSSSSSSNSSSSSSLTAVSAVSSSSAMDPSLPSRPPE
ELTLSPKLQLDGSLTINSSSNSLQASPRSLLPGLLPGPADKLTPKGPGQVSTAASALSLD
LQEVEPLGLPQASPSRTRSPDVISSASTALSQDIPEIASEALSRGFGSSVPEGLSEPDSM
ASAASALHLLSPRPRQGPELGSQLGLDGGPGDGDRRNTPSLLEAALTQEVATSDSQVWPT
APDITRETCSTLAESPRNGLQEKHKSLVFHRPPYHLLQQHDSQDTSAEQSDHDDEVASLA
SASGGFGTKIPTPRLPAKDWKTKGSPRTSPKLKRKSKKDDGDSAVGSRLTEHQVGEPPED
WPALIWQQQRELAELWHNQEELLQRLCAQLEGLQNTVTDHVERALETRHEQEQRRLERAL
AEGQQRGGQLQEQLTQQLSQALSSAVAGRLERSIRDEIKKTVPPCVSRSLEPVAGQLSNS
VATKLTAVEGSMKENISKLLKSKNLTDAIARAAADTLQGPMQAAYREAFQSVVLPAFEKS
CQAMFQQINDSFRLGTQEYLQQLESHMKSRKAREQEAREPVLAQLRGLVSTLQSATEQMA
ATVSSSVRAEVQHQLHVAVGSLQESILAQVQRIVKGEVSVALKEQQATVTSSIMQAMRSA
AGTPVPSSHLDCQAQQAHILQLLQQGHLNQAFQQALTAADLNLVLYVCETVDPAQVFGQP
PCPLSQPVLLSLIQQLASDLGTRSDLKLSYLEEAVMHLDHSDPITRDHMGSVMAQVRQKL
FQFLQADPHNSLGKAARRLSLMLHGLATPSLP
NT seq
4239 nt
NT seq
+upstream
nt +downstream
nt
atggcctcctgcgcgagcatcgacatcgaggacgccacgcagcatctgcgggacatcctc
aagctggaccggcccgccggaggctctaatgcagagagccaaaggccatccagtgcctac
aatggagacctcaatgggctcctggttccagacccactcagctcaggtgatggtaactca
acaagcaaacctggtgcacggaccatgccacctattaacctgcaggaaaagcaggtcatt
tgcctctctggagatgacagctctacttgcattggaattttggccaaggaggtggaaatt
gtagccagcagtgattctagcatttccagcaaggcccgggggagcaacaaggtgaaaatc
cagcctgtcgccaagtatgactgggagcagaaatactactatggcaacctgattgcagtg
tctaactccttcttggcgtatgccattagggctgccaacaatggctcagcaatggtacgt
gtgatcagtgtcagcacttcagagcggaccctgctcaaaggtttcacaggcagtgtagct
gatctggccttcgcacacctcaactctccacagcttgcctgcctggatgaggctggcaat
ctttttgtgtggcgcttggctctggttaagggtaaaattcaagaagagattttagtccat
atccgacagccagagggcacaccactgaaccacttccgaaggatcatctggtgccccttc
atcccagaggaaagtgaggactgttgtgaggaaagtagcccaacagtggccctgctgcat
gaagaccgggcggaggtgtgggacctggatatgcttcgtgccagccataacgcctggcct
gtggatgccagccagatcaagcagggcttcattgtagtaaaaggccatagcacgtgctta
agtgaaggagccctctctcctgatgggactgtcctggctactgcaagccatgatggcttt
gtcaagttctggcagatctatattgaaggtcaggatgagccaaggtgtctgcatgaatgg
aagcctcatgatggacggcccctttcttgcctcttattctgtgataaccataagaaacag
gatcctgaggtcccattctggaggttcctcattactggcgctgatcaaaatcgagaactg
aagatgtggtgcacagtatcctggacctgcctgcaaaccattcgtttctccccagatatc
ttcagctcagtgagcgtacctcccagcctcaaagtttgcttggacctctccgcagagtat
ctgatccttagtgatgtgcaacgaaaggtcctctacgtgatggagctgctacagaaccaa
gatgagggccgtgcttgctttagttccatctctgagtttctgctcacccaccctgtgctg
agctttggcatacaggttgtgagtcgctgccggctgcggcacactgaggtgctgcctgct
gaggaggagaatgacagtctgggggctgagagctctcatggagctagtgccatggaatct
gcagctggtgtgcttatcaagctcttctgtgtgcacactaaagcactacaggatgtgcag
atccgcttccagccacagctgaaccctgatgtggtggctccactccctacccacactgct
cacgaggacttcactttcccaacagcgtttggagagtctcgacctgaactaggctctgag
gggctagcttcagctgctcatgggtctcagcctgacctccgacgcatcgtggaactgccg
gcacctgcagacttcctcagtctgagcagtgagaccaagcctaagttgatgacccctgat
gctttcatgactcccaccgcttccctgcagcagatatctgcgtcccctagtagcagtagc
agtagtagcagcagcagcagcagcagcagcaacagcagcagcagcagttccctgacagct
gtgtctgctgtgagtagctcctcagccatggacccctccttgcccagtaggccacctgag
gagttgaccttgagtcccaagctgcaactggatggcagcctgacaataaacagcagcagc
aatagcctgcaggcaagccctcgaagcctccttcctggcctactcccaggcccagctgac
aaattgactcccaagggacctgggcaggtatctactgctgcctctgcattatccttggat
ttgcaagaagtggaacctctggggctaccccaggcctcccccagtcgcacccgttcccct
gatgtgatctcttcagcatccactgccctgtcccaggacatccctgaaattgcgtctgag
gccttgtcccgtggctttggctcctctgttcctgagggtctcagtgagccagacagtatg
gcctcagctgcttctgcactgcacttactatctccccggccccggcaaggccctgaactt
ggctctcagcttggcctggatggaggccctggggatggggatcggcgtaataccccctcc
ctactggaagcagccttgacccaggaagttgcaacctctgacagtcaagtctggcctaca
gcacctgacattactcgtgaaacttgtagtaccttggcagaaagccccaggaatggcctc
caggaaaagcacaaaagcctggtcttccatcggccaccttatcatctactacagcaacat
gacagtcaggacactagtgctgagcaaagtgaccatgatgatgaggttgccagccttgct
tctgcctcaggaggttttggtaccaaaattcctactccacggctgcctgccaaggattgg
aagaccaagggatcccctagaacttcacccaaactcaagaggaaaagcaagaaggatgat
ggggattcagctgtgggatcccggctcacagagcaccaggtgggagagccccctgaggac
tggccagcattaatctggcagcagcaaagagagctggcagagctatggcacaaccaagaa
gagctgctacagcgtctctgtgcccaacttgaaggcctacagaacactgtcactgaccat
gtagaacgtgccctggagacccggcatgaacaagagcagcggcgactggaacgggcactg
gctgaggggcagcaacggggtgggcagctgcaggagcagctgacacagcagctgtcccag
gcattgtcttcagctgtggctggacggctagagcgcagtataagggatgaaatcaagaag
acagttcctccatgtgtctccagaagtctggagcctgtggcgggtcaactaagcaactca
gtggctaccaaacttacagctgtggaaggcagcatgaaagagaatatctctaagctactc
aagtccaagaacttgacagatgccattgcccgagcagctgcagacacattacagggacca
atgcaggctgcctaccgggaagccttccagagtgtggttttgccagcttttgaaaagagt
tgccaggctatgttccagcaaatcaatgatagctttaggctgggcacacaggaatatttg
cagcagctagagagtcacatgaagagccggaaggcacgtgaacaggaagctagggagcct
gtgctggcccagcttcggggcttggtcagcacactgcagagtgccactgagcagatggca
gccactgtgtctagcagtgttcgggctgaggtgcaacaccagctgcatgtggctgtaggc
agcttgcaggagtcaattttagcacaagtacaacgcattgttaagggtgaagtaagtgtg
gcacttaaggagcagcaggccactgtcacttccagcatcatgcaggccatgcgctcggct
gctggcacacctgttccttcttcgcaccttgactgccaggcccaacaagctcatatcttg
cagttactgcagcagggccaccttaatcaggccttccagcaggcactgacagccgctgat
ctcaacctggtgctgtatgtgtgtgagaccgtggacccagcccaggtttttgggcagccg
ccctgtccactatcccagcctgtactcctttccctaatccagcagctggcatctgacctt
ggaactagaagtgacctaaagctcagctatttggaagaggctgtgatgcacctggaccac
agtgatcccatcactcgagaccacatgggctctgtcatggcccaggtgcgccagaagctc
ttccagttcctgcaagctgatccacacaactctcttggcaaagctgcccgtcgtctcagc
ctaatgttacatggccttgcaacccctagcctcccttag
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integrated database retrieval system
