Phodopus roborovskii (desert hamster): 127235220
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Entry
127235220 CDS
T08852
Symbol
Ercc6
Name
(RefSeq) DNA excision repair protein ERCC-6
KO
K10841
DNA excision repair protein ERCC-6
Organism
prob
Phodopus roborovskii (desert hamster)
Pathway
prob03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
prob00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
127235220 (Ercc6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
prob03036
]
127235220 (Ercc6)
03400 DNA repair and recombination proteins [BR:
prob03400
]
127235220 (Ercc6)
Chromosome and associated proteins [BR:
prob03036
]
Eukaryotic type
Chromatin remodeling factors
B-WICH complex
127235220 (Ercc6)
DNA repair and recombination proteins [BR:
prob03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
Other TCR factor
127235220 (Ercc6)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
ResIII
DEAD
HDA2-3
Motif
Other DBs
NCBI-GeneID:
127235220
NCBI-ProteinID:
XP_051058416
LinkDB
All DBs
Position
Unknown
AA seq
1476 aa
AA seq
DB search
MPYEEISNSPQLQEQDCSPNEHASTNEDMPVGQESGGDSEAGEFGSTSCDYGPSTSAEAC
ALAATRPGPTLLHIDRHQIPAVEPSAQALELQGLGVDVYDQAVLEQGVLQQVDSAMHEAS
RVAQLADAEKEYQSVLDDLMSCSTSLKQINKIIEQLSPQAASNRDINRKLDSVKRQKYNK
EQQLKKITAKQKRLQAILGGARVQVEMDHASLEDEDAEPGPSCLGSMLMPAQEAAWEELI
RTGQMTPFGTPAPQKQEKKPRKIMLNEVSGFEKYLADQAQLSFERKKQAANKRAAKKAVV
VSDESSAGPKETKPGQSSQGLSQADKRLKKHIRKLQKRALQFQGKVGLSQGRRPLESQGR
PEEQGDTEGEESGEEEEEEQEEEEEEEEGVANLSSDDYELRPLRKGRKYQKKVPVQEVDD
DFFPSSGEDDDEAMEGRGGGRKVARCPDDGDEDYYKQRLRRWNKLRLQDKEKRLKLEDDS
EESDAEFDEGFKVPGFLFKKLFKYQQTGVRWLWELHCQQAGGILGDEMGLGKTIQIIAFL
AGLSYSKIRTRGSNYRFEGLGPTVIVCPTTVMHQWVKEFHTWWPPFRVAILHETGSYAHK
KERLIRDIVHCHGVLITSYSYIRLMQDEISRHDWHYVILDEGHKIRNPNAAVTLACKQFR
TPHRIILSGSPMQNNLRELWSLFDFIFPGKLGTLPVFMEQFSVPITMGGYSNASPVQVKT
AYKCACVLRDTINPYLLRRMKSDVKMSLSLPDKNEQVLFCRLTDEQHKVYQNFIDSKEVY
RILNGENQIFSGLVALRKICNHPDLFSGGPKNLSGLPEDELEEDQFGYWKRSGKMIVVES
LLKIWHKQGQRVLLFSQSRQMLHILEVFLRAHQYSYLKMDGTTTIASRQPLITKYNEDSS
IFVFLLTTRVGGIGVNLTGANRVIIYDPDWNPSTDTQARERAWRIGQKKQVTVYRLLTAG
TIEEKIYHRQIFKQFLTNRVLKDPKQRRFFKSNDLYELFTLSSPDVSQSTETSAIFAGTG
SDVQTPKCHLKKKTPPALGTDPKCKKSPFSDMSANGAVLTEEKSKATGTVGSATSREGDL
LNGDCRLSGSRASSVAFGEETGAGSKLSVISGDGKCSDFPTVDHTSRPPGEANASEKQGP
SYKGEGCQGQTEPACGSEQTEGHFCKHKSKRKHDVAKEETPEKCPQPKQKAKSSRHCRDA
KFEGTRVPHLVKRRRYHQQNSEQESKAKDRSSDDYVLEKLFKKSVGVHSVVKHDAIVDGT
NPDYVLVEAEATRVAQDALKALKFSRQQCLGAASGVPTWTGHRGSSGAPAGIKNRFGKKR
NSNLPVQRPPSSLTEKYQNNVKKEGKAPAPEHFSGKEDGASLSGAPCSSSLLARMRARNH
LILPERLESDSGHLAEAAALPPSSTEHDDLLVEMRNFIAFQAQVDGQASTQEILQEFESK
LSVTQSCVFRELLRNLCNFHRTPGGEGIWKLKPEYC
NT seq
4431 nt
NT seq
+upstream
nt +downstream
nt
atgccctatgaggaaatctccaactcacctcaacttcaggagcaagactgttcaccaaat
gagcatgccagtactaatgaagacatgccagtcgggcaggagagtggtggggactcagag
gctggggagttcggctctacttcctgtgactatgggccatccacatctgccgaagcttgt
gcgttggcagccacaaggccagggccaaccctgctacacattgatcggcatcagatcccc
gcagtggagcccagtgctcaggccctggagctgcagggcttgggtgtggacgtctatgac
caagccgtcctggagcaaggtgtgcttcagcaggtggacagtgcgatgcatgaagctagc
cgtgtggcccagcttgctgatgcggagaaagagtatcagtcagtcctggatgacctcatg
tcatgttcaacatccctgaagcaaattaataaaattatagagcaacttagccctcaagct
gccagcaacagagacatcaacaggaaactagattctgtaaaacggcagaaatataacaag
gaacagcagctaaagaagataactgcaaaacaaaaacgtctccaggccatccttggaggg
gccagggtccaagtagaaatggatcatgccagcctggaggatgaagacgcagagccaggg
ccatcatgtcttggcagtatgctcatgcctgcccaggaggccgcttgggaagagcttatc
cgcactggtcagatgacaccgtttggcaccccagcccctcagaaacaggaaaaaaagcct
agaaaaataatgctcaatgaagtatcaggctttgaaaaatacttggctgaccaagcacaa
ctgtcttttgaaaggaagaaacaagccgctaacaaaagagcagctaaaaaagcggtggtc
gtatctgatgagtcaagcgcaggaccaaaggagaccaaaccaggccagagcagccaaggc
ctctcccaggcagataagcgcttgaagaagcacatcaggaagctccagaagagggcgctg
cagttccaggggaaagtgggactgtcccaggggaggagacctctggagtcccaggggagg
ccagaggaacagggagatactgagggggaggagtctggggaggaggaagaagaagaacaa
gaggaagaggaggaggaagaggaaggggtggccaacctgtcttctgatgactatgaactg
aggcctctgcggaagggccggaaataccagaagaaagtcccagtgcaggaggttgatgat
gacttttttccaagttctggggaagacgatgatgaagctatggaaggaagaggaggaggt
cgcaaggtagcgaggtgcccagatgatggagatgaagattattataagcagcggttaagg
aggtggaataaactgaggctgcaggacaaagagaaacgcctgaagcttgaagatgattct
gaggaaagtgatgccgaatttgatgaaggcttcaaagtgccaggttttctgttcaaaaag
ctctttaagtatcagcagacaggtgttaggtggctgtgggaattgcactgccagcaggca
ggaggaattctgggagacgaaatgggattgggcaagaccatccagataattgccttcttg
gcaggtctgagctacagcaagatcaggactcgtggttcaaattacaggttcgagggactg
ggccccactgtaattgtctgcccaacgacggtgatgcatcagtgggtaaaagaattccac
acatggtggcctccattcagagtggcaatcctacatgaaacaggctcctatgcccacaaa
aaggagaggttgatcagagatattgttcattgtcacggagttttgatcacttcctattcc
tacatccgactgatgcaagatgaaattagcaggcatgactggcactatgtgatcttagat
gaaggacacaaaattcgaaatccaaatgctgcagtcacccttgcttgcaaacagttccgc
acccctcatcggatcatcttgtctggctcacccatgcagaataacctccgagagctgtgg
tcgctctttgacttcatcttcccagggaaactaggcacattgcctgtgtttatggaacaa
ttctctgtccctatcactatggggggctattccaatgcttccccagtacaggttaaaact
gcctataagtgtgcatgtgtcttaagagacaccattaacccatacctgctacggagaatg
aaatcggatgtgaagatgagcctttctttgccagataaaaatgaacaggtcttattttgc
cgtctaactgatgagcagcataaagtctaccagaatttcattgattccaaagaagtttac
aggattctcaatggagagaatcagattttctctgggcttgtagctctgaggaagatctgc
aaccaccctgatctcttttctggtggtcccaagaatctcagtggtcttccagaagatgaa
ctagaagaagatcagtttggttactggaaacgttctgggaaaatgatcgttgttgagtct
ttgctgaaaatatggcataagcagggtcagcgagtgctgctgttttcccagtcgaggcag
atgctgcacatactggaagtgttcctgagggcacaccagtattcctacctcaaaatggat
gggaccactaccatagcatcaagacagccactgattacaaaatacaatgaggactcatcc
atctttgtctttcttctgaccacacgggtgggtggcataggagtgaacctgaccggggcc
aacagagtcatcatctatgaccccgactggaacccaagcactgacacacaggcccgggaa
cgagcttggaggataggtcagaagaagcaggtaactgtctacaggcttctgacggctgga
accattgaggaaaagatctatcaccgccaaatcttcaagcaatttttgacaaacagagtg
ctaaaagatccaaaacaaaggcgcttcttcaaatccaatgacctttatgagctctttacc
ctgagtagtcctgacgtgtcccagagcactgaaacaagtgccatttttgcaggaactggc
tccgatgttcagacacccaaatgccatttaaaaaaaaagactccaccagccctcgggacg
gatcccaagtgcaagaagtcccccttttctgacatgtctgcaaatggtgcagttctgact
gaagaaaaatctaaggcgacagggactgtgggaagtgcaacttctagagaaggtgacctt
ttgaatggtgactgtcgcctgagtgggagcagagctagcagtgttgcatttggagaagag
acaggtgcagggtccaagctgtcagtgatcagtggagatgggaagtgttcagattttcca
acagtcgaccacacatccaggccacctggtgaggcaaacgccagtgagaagcagggtcct
tcctacaaaggggaaggctgccagggtcagacagaacctgcttgtgggagtgaacaaaca
gaaggtcatttttgtaagcacaaatcaaaaaggaaacacgatgtagcaaaggaagagacc
ccagagaaatgtcctcagcccaagcaaaaggccaagtcctccaggcattgcagggatgcc
aagtttgagggaactcgagtcccacacctggtgaagagacggcgataccaccagcaaaac
tctgagcaggagagcaaggccaaggaccgaagcagtgacgactatgttttggaaaagctt
ttcaaaaaatcagtgggagtgcacagtgtcgtgaagcacgatgccattgtggatgggacc
aacccggattatgtgctggtggaggccgaagccacccgagtggctcaggatgccttgaaa
gctctcaagttctcccgtcagcaatgcctgggggcagcatctggtgttcccacctggact
ggacacaggggctcttctggtgcaccagcaggaataaagaataggttcggtaagaagagg
aactccaacctccctgtgcagcgccctccttcatcactaacagaaaagtatcagaacaat
gtgaaaaaggaggggaaagctcctgcccctgagcacttcagtggcaaagaagatggagcg
tcattgtctggagccccctgttcctcctcactcttggccagaatgcgagcaagaaaccat
ctcatcctgccggagcgcttggaaagtgacagcggacacctcgctgaggctgctgccttg
cctccctccagcacggaacatgacgaccttctggtggagatgaggaacttcattgctttc
caggcccaggtggatggtcaggccagcactcaggagatcctacaggagtttgaatccaag
ctgtctgtgacacagtcctgtgtcttccgagaactactgagaaatctctgcaattttcat
agaactcctggtggtgaagggatttggaaactgaagccagagtactgttga
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