Phodopus roborovskii (desert hamster): 127235811
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Entry
127235811 CDS
T08852
Symbol
Alms1
Name
(RefSeq) centrosome-associated protein ALMS1
KO
K16741
alstrom syndrome protein 1
Organism
prob
Phodopus roborovskii (desert hamster)
Brite
KEGG Orthology (KO) [BR:
prob00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
prob03036
]
127235811 (Alms1)
09183 Protein families: signaling and cellular processes
03037 Cilium and associated proteins [BR:
prob03037
]
127235811 (Alms1)
Chromosome and associated proteins [BR:
prob03036
]
Eukaryotic type
Centrosome formation proteins
Other centriole associated proteins
127235811 (Alms1)
Cilium and associated proteins [BR:
prob03037
]
Primary cilia and associated proteins
Other primary cilia associated proteins
127235811 (Alms1)
BRITE hierarchy
Motif
Pfam:
ALMS_repeat
ALMS_motif
Motif
Other DBs
NCBI-GeneID:
127235811
NCBI-ProteinID:
XP_051059208
LinkDB
All DBs
Position
Unknown
AA seq
3054 aa
AA seq
DB search
MEPEDLPWPGELEEEQEEEEAAAAGEEEEKKAAAAETEDAAREEDIDFFEEDGPEVDLDF
GSGLQPRESTDDEEDEMAQAWLQAHPAHAGRAFSPPPPPRHLYAPVERLGDTERAEPWHH
LTQERDSSQTGDTSQTGTDVTLEGRKVTDFPSLEEGELSRSERPATEPKLNLLCSPLLVI
QDNFAAPDLPLLTCLPQDQEFESDSLFQQSELEFAPLRGIPDKSEDTEWLARPSEVSEAL
LQATSETSSDIVNSCLSISQHPLTEVLQGKAESSMVTLHGDTDYSSLYRTADVHSERVAE
LQREVDHSDLGVSQTFPSPLPSFVPQEPTSEPKYPSPSLRMLRVSPDSLPAALTAGAWND
PASVDQKTGASLVSPTYSHNVKPGGFLQELPDKHFTDETRKVLSAPRPAGQKPEMSTAHS
SSHSKGVRPAVFYPHPLSEPLSVSAVSGPAEKTRSPTVTSASQPHKETAKAFFQQTLSDT
HLTEEAVPVSVIPGRGDQKTSVPSELPVSYSLRAKNLPEDAFKASSVSKPSGISAITSAS
YLYKDRPNISYQQKFPDSHLTEGAQVSGTTGSVDQKIGTAVSMPSTSYSQKERPGVFYQQ
GLPGPVSEEALQAPATTRPVDRNITMPAATSTPSLQREKPWILYHEALPGGHLPGESLKV
SAVLGPPEQNTGAPAVSPGSFLPGEESIIFYQPGLPGNPLSAESFKAPGVSGLTEQKTST
PAGPSGSHPMGEKTIIFYQQALPHDHLPKDALDVLTSPGPVTLRTGEPPVHSTPYSFGEK
PIVFYQQVLSDDQQTKNGKVSVVPGPADQRSALPTVPSTSHSYVERPTVSYQQEFPDFPG
RSEKGLEVLRGAEVPVVPSAPYHREAASGSYQQELPDLTEEALLVLGVSGVGPSIPHSKD
ETPLVSYQQELPDLTEISGSTDQKIEAQIVSHLGRERPGGFHQEDKTVLSAGEDAVGTFA
DPGPFVQKVEKTQLPGTPTGPSSSYFHREKFNDVYPKAPPDHVLTENSLKASTVPGLPDQ
NRPAVSSGPHSHKEKHKISTSDLLGDQKPELSTVTHRSFLHREKPAVSSVIGPDDQKTPL
PTAFHGSCPQKVKPLGLVQKQLLDRDQSEDIPKISTVCDPTAVNTGVPVPLSGSLSHREK
VDTSCGYPQELPDRQLTEDALKVSICLGQAEQTSGLPTVTPSSYSHSEKHQLVSENVQKL
IDNLNYPESCSLIANDMPLNSQIDDEVIICKPESSGFGDVGYEEIRDTDHGSKTLKEIRT
LLMEAENIALKRCNFPAPLVPFRDVSDVSFIQSKKVVCFKEPSVTDVCTQREPFTEEFPH
IECTQKDMGTQTNLRCQSGVENWEFVSSATIRSPLQDARGTARVAFDGTFRQYEAARSVM
RSEAEGCGTGIGSKIIIPMMTIIKSDSSSDVSDGCCSWDSNLPESLESVSDVFLNFFPYT
APKTSMTESPEEEWLSESEDGRGSVDSLAAHVKYLLQCESSLNHAKQILKNAEEEECRVR
AQAWNLKFNLGHDYGYSISQLNEDDRRKVEEIKAKLFGHGRTAHVSEGLRSPRGIGRVPE
AVCSHIVIESHEKGCFRTVTAEQPRPDSRRCVFRSFEPSDLTRGRWSPSSWRGRHINLSR
SIDQSNTRFKVWNSFQLQSHPPFQKLAPEDIRISQGVGMPFHTNVDPRPLGLAEPTCVPA
KEMDCPSSSPTLPPESMKEFTTSISFSHGHSKCISDSSVFKVGVTEGSQGTGPSLGVFKP
RIPQEQISPRDVKQKTSPPSSLKRHSHSPVTILAEGSRQRQKLPDDFEHFHQKQKPLERS
DFKASHSEPSVSLNYSGVKGVQFSGKDTIIRPDKSSTLEVKEKSVAITPGLPSCIFLEQR
ELFEQSHSPHTGYQMREYSSSSCPDIASCIFLEQRELFEQSKAPQVDHEARGDLSFFPKC
QDYIAADLPSRDFLDPQQCEPPNVDDHMGQQQFPPSHGQDWVVGKIQHIPQSQFSNTIRV
EAKVSNLVSQSPPDYCTAASTPPSSRKALSCVRITLCPKTSSKVDSGTLDERFHSLDPAS
KTRINSECNFDLRTIPSRSLEPTSKLLTCKPVAKDQECLGFLGPGSPLDLQVAQSSLPDS
KTISEDLETKPPQNSQIVISRQTQVNISDLEEYSKPEGTPVSADGSQEQNKATLPTSSAK
LSSDAVTQITTESPEKTTFSSEIFINVDHGQEVQDPTAPKLPKLASSSSLQQITSSHGKD
AQPVLLPYKPSGSAKMYYVPQLKTVPSHLDSKSDTTVESSHSGSNDAIAPDFPPQVLGTR
DDDLSGTVNIKHTEGIYSKRAVSKMKIPPRNGNAGNECPRLFYVFPEPFYLKCGVHFVPL
GSSDTTEEDRKTENLPGAKSIKQKEEIQSECHSAFENTTHSVFRSAKFYFHHPVHLPHEQ
DVCHESLGRSVFMQHSWKDFFHHHSEHSCLPPPGPSADKTKMDYTRIKSLSINLNLGDNE
KMHTLKNQARDPKGKRQTNDQHKDQKATPELTSKCTLSLNELWNKYQERQKQQKSPGVCD
KKELSLVERLDRLAKLLQNPITHSLQASESTQDDSRGGRGARGWAGRRQHQQRAKLQRKR
RESLERGQNTGDFRKSRVLSHRGRKSSQIKIEQLKLDKYILRRRPDFNYTSNTSSDSRPS
EESEFLTDSANIFSSTASPVDSDVLTLTDRDVTLNERSSSISTIDTARLVQAFGQERLHL
SPRRIKLYSSVTNQQRRYLEKRCKHSWGAPSTGCPQMTSEHTRRRHIQVANPISSDSISS
AGSFLTLDSTLNDEGNVHMLNKGVQAGNLEIVTGAKKYTRDVGVTFPTPSSSEARLEEDS
DITSWSEETTKERKFLTSYLRDRNLRKIKPNSCEGVSWFVPVENKKSGSKKENLPKTYSP
GISWFEPVTKTKPWREPLREQNWQERCLSSRGGPGPGGDGGRVPPRPFVRATLQEALQLH
RPDFISRSGERIKRLKLLVQERKLQSLFQSEREALFNTVPPLPRRVLLAVQKSKPIGKKE
MIQRTKRVYEQLPEVKKKREEEKRKSEYKSYRLRAQHYKTRVTNQVLGRKVPWN
NT seq
9165 nt
NT seq
+upstream
nt +downstream
nt
atggagccggaggatctaccgtggccgggcgagctggaggaggagcaggaggaggaggag
gcggcggcggcgggggaggaggaggagaagaaggcggcggcggccgagaccgaggacgcg
gcgagagaggaagacatagacttcttcgaagaggacgggcccgaggtggatctggatttc
ggcagcgggttgcagccgcgggagagcacggacgacgaggaggacgagatggcgcaggcc
tggctgcaggcgcaccctgcccacgccggcagggctttctctccgcccccgcccccgcgg
cacctgtacgctccggtggagcgcctgggcgacacggagagagcagaaccctggcatcat
cttactcaagaaagggattcttcccaaaccggggatacatcccagaccgggaccgatgtg
acactagaagggaggaaagtaacagacttcccctctctggaggaaggtgaattgtctcgg
tcagaacggccagccacggaaccaaagctaaatctcctgtgttctccattgctagtcata
caggataactttgctgcccctgatttgcctttgctgacatgtttgccacaagaccaggag
tttgaatctgattccttgtttcaacaaagtgaactagaatttgcccctttgagagggatt
cctgataagtcagaagatactgaatggcttgctcggccgtcagaagttagtgaagcttta
ctccaggccacctcagaaacctcttcagacatagtgaacagttgccttagtatatctcaa
catccacttacagaagtcctgcaggggaaggctgagtctagcatggttactctgcatggt
gatactgactactccagcctgtatagaactgctgatgtgcacagtgagagagttgctgaa
ttacaaagagaggtagaccattctgatctgggcgttagccagacttttccatctccattg
ccttcgtttgttcctcaagaaccaaccagcgagccaaagtatccttcccccagtctccga
atgttgagggtttctcctgacagtctgccagcagctcttaccgcaggtgcttggaacgat
cctgcctctgttgaccagaagactggagcatcactagtctctcccacctactcacacaat
gtaaagcctggcggttttctccaggagttgccagataagcattttactgacgagactcgg
aaagtgttatctgctcctaggccagctggccagaagccagagatgtcaacagcacactct
agctctcattcaaagggagtgagacctgctgttttctatccacatcctctgtcagagcct
ctgagtgtttcagctgttagtggaccagccgagaagacccggtccccaacagtcacctct
gcttcccagccacataaagagacagctaaagctttcttccagcagacactatcagacact
catctgactgaagaagcagtgcctgtttctgttattccaggccgaggtgaccagaagact
tctgtaccatcggaattacctgtttcctattctctcagagcaaagaacctgcctgaagat
gctttcaaagcttcatctgtttctaaaccatctggaatatcagctatcacctctgcttcc
tatttatataaagacagacccaatatttcttatcagcagaaatttccagacagccaccta
actgaaggggcccaagtctcgggcacaactggatcagtagaccagaagataggtacagca
gtgtccatgccctctacttcctattcacaaaaagagaggcctggtgttttctaccaacag
ggcctgcctggtcctgtgtctgaagaggccctgcaagccccagctactactaggccagtt
gaccgaaacattactatgccagctgcaacctctactccctccttacagagagagaagcct
tggattttgtaccatgaggccctaccaggcggtcatttgcctggagagtctctgaaagtt
tcagctgtccttggaccacctgagcagaacacaggggcaccagcggtatctcctggttcc
ttcctccctggagaagagtccattattttttaccagcctggcttgccaggaaaccctcta
tctgcagagtcttttaaagctccaggggtttctggattaactgagcagaagactagtaca
ccagcaggaccatcaggttcccatccaatgggagagaagaccattattttctaccagcag
gccttgccacatgaccatcttcctaaagatgctttggatgttttaacttcccctggacca
gtcaccttgaggactggggagccaccggtacattctactccctattcttttggagaaaag
cccattgttttctaccagcaggtcctgtcagatgatcagcaaactaaaaatgggaaagtg
tcagttgttcctggaccagctgaccagaggtctgcgctgccaacagtgccgtctacttcc
cactcgtatgtagagaggcctactgtttcttaccagcaagagtttccagatttcccaggt
cgtagcgaaaaaggtttggaagttttaaggggtgctgaagtaccagtagtaccctctgct
ccctatcacagagaggccgctagtggttcctaccagcaggagttgccagatcttactgaa
gaagctttgctagttctaggtgtttctggagtagggccttctatccctcactcaaaggat
gagacacccctcgtctcttaccagcaggagttgccagatcttactgaaatatctgggtct
actgatcagaagattgaggcacaaatagtttcccacttaggcagagagcggcctggtggt
tttcatcaagaggataaaacagtgctgagcgctggcgaggacgcagtaggcacttttgct
gatcctggaccgtttgttcagaaggttgagaaaacacagctgcctggcactccaacaggg
ccttctagttcctacttccatagagaaaagttcaatgatgtttacccaaaggccccacca
gatcatgttctaactgaaaattctctgaaggcttcaactgttcctggactacctgaccag
aatagacctgcggtctcatccggtccccactcacacaaggagaaacacaagatttccact
tcagatctactgggcgaccagaagcctgagttgtcaacagttactcataggtccttccta
catagggagaagcccgcagtttcatctgtgattggaccagatgatcagaagactccatta
ccaacagcctttcatggttcctgtcctcaaaaagtaaaacctcttggtttggttcaaaaa
cagttactggatagagatcaaagtgaagatattccgaagatttcaactgtctgtgaccca
actgctgtaaacacaggtgtaccggttcctctgtctggctctctgtcacacagagagaaa
gtagatacatcctgtggatacccacaggagctgccagacagacagctaactgaagatgct
ctgaaggtttcaatttgtcttggtcaagctgaacagacttctggtttacctacagttact
cctagttcttactcacacagtgaaaagcaccagctcgtctcagaaaatgtccaaaagctg
atagataacttgaattatcctgagtcttgttctctcattgcaaacgatatgcctttaaat
tcgcagattgatgatgaagttatcatatgtaagccagaatcttcaggttttggtgatgtt
ggttatgaggaaatccgggatacagatcatggttccaaaacccttaaagaaattcggact
cttttaatggaggcagaaaatatagcactgaaacgatgtaatttccctgctcctttagtc
cctttcagagatgttagcgatgtttcatttatacaatccaagaaggtggtttgcttcaaa
gagccctctgtaactgatgtctgtacgcagagggagcctttcacggaggagttccctcac
attgagtgcacgcagaaggacatgggtacacagacaaacctcaggtgccagagtggggtt
gaaaattgggagtttgttagttcagctacgatcagaagtcctctgcaggatgcgcgaggc
acagcaagagtggcatttgatggaactttcaggcagtacgaagctgccaggtccgtaatg
aggtctgaagctgaaggttgcggtacaggcattgggagcaagattattatccctatgatg
acaatcataaagagtgactccagtagtgatgtaagtgacggttgctgctcgtgggacagc
aatttgccagagtctttggagtctgtttctgatgtttttctaaacttcttcccatacact
gcacccaagacaagcatgacagaaagccctgaggaagagtggttgtcagagagtgaagac
ggccgtggtagtgtggattcactggctgcacacgtcaagtaccttctgcagtgcgaatcc
tcactgaatcatgccaaacagatacttaaaaatgcagaggaagaggagtgtcgggttcga
gcccaagcctggaatctaaagtttaatttaggacatgactatggatactccatttcacaa
ttaaatgaagacgacaggaggaaagtagaagagataaaggcaaagttgtttggtcacgga
agaacagctcatgtgtctgagggcttacgtagtccacggggaataggacgtgtgcccgaa
gctgtatgcagtcacattgttattgagagccatgagaaaggatgtttcaggactgttact
gctgaacaaccacgaccagacagccgccgttgtgttttccgatcttttgaaccttcagac
ttgactagaggacgctggagcccatcatcatggagaggcaggcacatcaacctttccaga
tcgatagatcagagcaatacccgttttaaagtgtggaattcctttcagttacagagtcat
cccccatttcaaaaacttgcacccgaagacatcagaattagccagggtgttggaatgccc
ttccacacaaacgtggacccccggccattgggattagcagaacctacttgtgtgcctgct
aaagaaatggattgtccttcctcatcaccaacactgccccctgagtccatgaaggagttc
actacctccatttctttttctcatggacactctaagtgcatttctgatagctctgttttt
aaggttggtgttactgaaggtagccagggtactggaccatctttaggagtatttaagcct
cgtatcccccaagagcagatttctcctagagatgttaaacagaaaacctctcccccttca
tcacttaaaaggcacagtcattccccggtgactattttagctgaaggtagtaggcaaagg
caaaaattacctgatgattttgagcattttcatcaaaaacaaaaacccttagaaagatct
gattttaaagccagtcattctgaacccagtgtcagtctgaactatagcggggtcaaggga
gttcagttttctggcaaggataccattattagaccagacaaaagttctacactagaagta
aaggagaagagtgtagctataactcctggtctcccttcttgcatttttcttgaacagcga
gagctctttgagcaaagccacagcccacacacaggttaccagatgagagaatactcttct
tcctcttgcccagacattgcttcttgcatttttcttgaacagcgagagctctttgagcag
agcaaagccccacaggtagatcatgaagccagaggagacctttctttctttcctaagtgc
caggattatatagctgcagatcttccttctcgagattttcttgatccgcagcaatgcgaa
cccccaaatgtagatgaccatatggggcaacagcagttccctccttctcacggtcaggat
tgggtagtgggaaagattcagcatatacctcaatcgcagttctctaatacgatacgtgtt
gaagccaaggtcagtaatttggtctcccagtcaccccctgactactgtaccgctgcatct
actccaccttcaagtaggaaagctctttcatgtgttcgtataactctgtgtcccaagact
tcttccaaggtggatagtggaaccttagatgaaaggtttcattcattggaccctgcttct
aaaacaaggattaatagtgagtgtaactttgatcttcgaactataccttcaaggtcattg
gaaccaacctccaaattactgacctgtaaacctgtagcaaaggatcaagaatgtttaggt
tttctaggacctggatctccactggacttgcaagttgcacagtcttctcttccagatagt
aagactatttctgaggacttggaaaccaaacctcctcagaatagccagatagtaatctca
aggcaaacacaagtgaacatatcagatttggaagaatattccaaaccagaggggactcca
gtatctgcagatggttcacaagagcagaataaggccacccttcctacatcctctgcgaag
ttatcatctgatgcggtcactcagataacaacagaaagtccagaaaagaccacgttttcg
tctgaaatttttattaatgttgatcatggacaggaagttcaagaccccacggccccaaag
cttcccaagcttgcctcatcatcctcactacagcaaataacatcttctcatggcaaagac
gcccagccggtactgttgccatataagccatctggtagtgcgaagatgtactatgttcca
caattaaaaacagtgccttcacatctggattccaaatcagataccactgtggagagctca
cattcagggtccaatgacgccattgccccagactttccacctcaagtgctaggcacgaga
gacgatgacctctcgggcactgtgaacattaagcatacagaagggatctatagcaagagg
gcggtgtcaaagatgaaaatcccccctcggaatgggaatgcaggtaacgagtgccctcgc
ctgttttacgtctttcctgaacctttttatttgaaatgtggtgttcattttgttccctta
ggttccagtgataccactgaagaagacagaaaaactgagaacctgccaggcgctaaatcc
attaaacagaaggaggagatccagtctgaatgtcattctgcatttgaaaacaccactcac
tctgtcttcaggtcagccaagttttacttccatcatccggtacacctgccacacgagcaa
gatgtctgccacgagtccttgggaaggagtgtattcatgcagcattcttggaaggatttc
tttcaccatcattcagagcacagctgcctccctcccccaggcccaagtgcagacaagacc
aagatggattacaccagaattaagagcctcagcatcaatttgaatttgggagacaatgag
aagatgcatactctcaagaatcaggccagagacccaaagggcaaaaggcagacaaatgac
caacacaaggatcagaaggccaccccagagctaacatcaaagtgcaccctgagtttgaat
gaactctggaataagtaccaggagcgacagaaacagcagaaatcacctggcgtttgtgat
aagaaagaactctctttggtggaacggcttgaccgtttagctaaactgcttcagaatccc
atcacacattccctccaggcctcagaaagcacgcaggatgatagcagagggggccgagga
gcgaggggctgggctgggaggaggcagcatcagcagagggccaagctgcagaggaagcga
cgtgagagcctagagaggggtcagaatacaggagactttaggaaaagcagggtgctttct
catcgtggcaggaagtccagtcagattaagattgagcagttaaaattagataaatacatc
ctgagaagacggccagattttaattacaccagcaatacttcctcagattctagaccctcg
gaggaaagtgagttcctcacagacagtgccaacattttttccagcaccgcttctcctgtg
gactcggatgtgttgacgctgaccgacagggatgtgactttaaacgaaaggagtagctcc
atatccaccattgacacagcccggttggtccaagcttttggccaggagagactgcatttg
tcacccaggcgaattaaattgtacagcagtgtcactaaccaacagaggcggtatctggag
aagcgttgcaagcacagctggggcgcgccgagcacaggctgtccccagatgacctccgag
cacaccaggaggaggcacatccaggtggcaaatcctatttcttctgactccatttcatct
gctggtagtttcttgaccttggactctactcttaatgatgaaggaaatgtgcacatgttg
aacaagggtgtacaagctggtaacttggagattgtgactggtgccaaaaaatacactcgg
gatgttggggtgactttcccaactcccagttctagtgaggccagactggaagaggacagt
gacatcacttcctggtcagaagaaaccaccaaagagagaaagttccttaccagttatctg
cgggacagaaacttaaggaaaatcaagccaaactcctgtgaaggtgtctcatggtttgtt
cctgtggaaaataaaaagtctggatctaagaaagaaaacctgcctaagacttacagccct
ggcatctcctggtttgaaccagtaaccaaaaccaaaccctggcgggaaccactaagagag
caaaactggcaggaacgatgcctgagcagccgtgggggcccgggccctgggggagatggt
ggccgggtccctcctaggccatttgtgagagcaaccctgcaggaagctcttcagcttcac
agacctgattttatctcccgctctggggaacggataaagcgcctgaagttacttgttcag
gagaggaagctgcagagcttatttcagagtgagcgggaggctctgttcaacactgtgcca
cccctgcccagaagagtcctcctggctgtccagaagagcaagcctattggaaagaaggaa
atgatccagaggaccaaacgggtttatgagcagcttccggaagtgaagaagaagagagaa
gaggagaagaggaaatcagaatataaatcctaccggttgcgagctcagcactacaaaacg
agagtgaccaaccaagtcctggggagaaaggtgccgtggaactga
DBGET
integrated database retrieval system
