Phodopus roborovskii (desert hamster): 127235886
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Entry
127235886 CDS
T08852
Symbol
Polr1a
Name
(RefSeq) DNA-directed RNA polymerase I subunit RPA1
KO
K02999
DNA-directed RNA polymerase I subunit RPA1 [EC:
2.7.7.6
]
Organism
prob
Phodopus roborovskii (desert hamster)
Pathway
prob03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
prob00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
127235886 (Polr1a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
prob03021
]
127235886 (Polr1a)
Enzymes [BR:
prob01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
127235886 (Polr1a)
Transcription machinery [BR:
prob03021
]
Eukaryotic type
RNA polymerase I system
RNA polymerase I
Core subunits
127235886 (Polr1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_1
RNA_pol_Rpb1_4
DUF1639
Motif
Other DBs
NCBI-GeneID:
127235886
NCBI-ProteinID:
XP_051059230
UniProt:
A0AAV0A2I2
LinkDB
All DBs
Position
Unknown
AA seq
1717 aa
AA seq
DB search
MLASKHTPWRRLQGISFGMYSAEELKKLSVKSITNPRYVDSLGNPSANGLYDLALGPADS
KEVCSTCVQDFSSCSGHLGHIELPLTVYNPLLFDKLYLLLRGSCLNCHMLTCPRAAIHLL
VCQLRVLEVGALQAVYELERILSRFLEETANPSAFEIQEELEEYTSKILQNNLLGSQGAH
VKNVCESKSRLIAYFWKTHMTAKRCPHCKTGRSVVRKEHNSKLTITYPAIAHKKSGQKDA
EPPEGEPAAPGIEEALMGKRGYLTPSSAQEHLFAIWKNEGFFLNYLFSGLDDIGMESSFN
PSMFFLDFIVVPPSRYRPVNRLGDQMFTNGQTVNLQAVMKDAVLIRKLLALMAQEQKLPC
EMTELSTDKENESSVAIDRSFLSMLPGQSLTDKLYNIWIRLQSHVNIVFDSEMDKLMMEK
YPGIRQILEKKEGLFRKHMMGKRVDYAARSVICPDMYINTNEIGIPMVFATKLTYPQPVT
PWNVQELRQAVINGPNVHPGASMVINEDGSRTALSAVDATQREAVAKQLLTPATGAPKPQ
GTKIVCRHVKNGDILLLNRQPTLHRPSIQAHRAHILPEEKVLRLHYANCKAYNADFDGDE
MNAHFPQSELGRAEAYVLACTDQQYLVPKDGQPLAGLIQDHMVSGANMTIRGCFFTREQY
MELVYRGLTDKVGRVKLSPPAILKPFPLWTGKQVVSTLLINIIPEDYTPLNLSGKAKIGS
KAWVKETPRPVPNFDPNSMCESQVIIRGGELLCGVLDKAHYGSSAYGLVHCCYEVYGGET
SGRVLTCLARLFTAYLQLYRGFTLGVEDILVKPDADVKRQHIIEESTQCGPRAVRAALNL
PEAASCDEIQGKWQDAHLGKDQRDFNMIDMKFKEEVNHYSNEINKACMPFGLHRQFPENN
LQMMVQSGAKGSTVNTMQISCLLGQIELEGRRPPLMASGKSLPCFEPYEFTPRAGGFVTG
RFLTGIKPPEFFFHCMAGREGLVDTAVKTSRSGYLQRCIIKHLEGLVIQYDLTVRDSDGS
VVQFLYGEDGLDIPKTQFLQPKQFPFLASNYEVIMKSKHLHEVLSRADPQKVLRHFKAIK
KWHSKHSGALLRRGAFLSFSQKIQAAVKALNLKGKNENGRSPETQQMLQMWYELDEQSRR
KYQKRAAPCPDPSLSVWRPDIFFASVSETFEKKIDDYSEEWAAQAERSYKKSELSLDRLR
TLLQLKWQRSLCDPGEAVGLLAAQSIGEPSTQMTLNTFHFAGRGEMNVTLGIPRLREILM
VASANIKTPMMSVPVFNTKKALKRVKNLKKQLTRVCLGEVLQKVDVQESFHMGEKQNRSR
VYELRFHFLPHAYYQQEKCLRPEDILHFMETRFFKLLMEAIKKKNSKASAFRSVNTRRAT
QKDFDDAEDSGKSRREEEGDEEEEGNIVDAEAEEGDADASDTRRKEKQEEEVDYESEEEG
EEEMEEEDAQDEGNINGEDAHQAREPGEEEGSDLEQESSQNAAHQHSRTQGAEAVERRIQ
AVREAHSFIEDYQYDTEESLWCQVTLKLPLMKIHFDMSSLIVSLAHNAIVYTTKGITRCL
LNETTNSENEKELVLSTEGINLPEMFKYSEVLDLHRLYSNDIHAMASTYGIEAALRVIEK
EIKDVFAVYGIAVDPRHLSLVADYMCFEGVYKPLNRFGIQSSSSPLQQMTFETSFQFLKQ
ATMMGSHDELKSPSACLVVGKVVKGGTGLFELKQPLR
NT seq
5154 nt
NT seq
+upstream
nt +downstream
nt
atgctggcctccaagcacacgccatggaggcgacttcagggcatttccttcgggatgtat
tcggctgaggagctcaagaaattaagtgtaaaatccattacaaaccctcgctatgtggac
agcctgggaaacccttcagcaaatggcctgtatgacttggctttgggtcctgcagattcc
aaagaagtgtgctccacctgtgtgcaggacttcagcagctgctcgggacacctgggccac
attgagctcccgctcacagtgtacaaccctctcctcttcgataaactctacctcctgctc
cgaggctcctgtttaaattgccacatgctgacttgtccccgagctgccattcacctgttg
gtctgccagctgagggtcctggaagttggagccctacaagcagtctatgaacttgagcga
attctgagcaggtttctcgaagaaactgctaatccttccgccttcgaaattcaagaagag
ttagaagagtacacaagcaaaatcctgcagaacaacctcttggggtcccagggtgcacat
gtgaaaaatgtctgcgaaagcaagagcaggctcattgcttacttttggaagacacatatg
actgctaagcggtgtccccactgcaagactggacggtcagtggttcgaaaggagcacaac
agtaagctgacaatcacatatccagccatagcgcacaagaaatctggccagaaggatgca
gagcccccagaaggagaaccagcagctccaggaattgaagaagctctgatggggaagcga
gggtacctgacacctagcagcgcccaagagcatctttttgccatttggaaaaatgaagga
ttcttcctgaattaccttttctcgggattggatgatattggcatggagtccagtttcaac
cccagcatgttctttctagatttcatagtggtgccaccctccaggtatcgtcctgtcaat
cgcctgggggaccagatgtttactaatggccagacggtgaacttacaagctgtcatgaaa
gatgcagttttgatccggaaacttctggcattgatggcccaagaacagaagctgccctgt
gagatgacagaactcagcacagacaaggaaaatgagtcttcagttgctatcgaccgatcc
tttttaagtatgcttccaggccagtctctcacagataaactttacaacatttggattcgc
cttcagagccacgtcaatattgtgtttgacagtgagatggacaagttaatgatggaaaag
taccctggcataagacagatcctagagaagaaggaaggcctgttccggaagcacatgatg
ggaaagcgagtcgactatgcagcccgctcagtcatctgcccagatatgtacatcaacacc
aatgaaattggaattcccatggtatttgccacaaaactgacctaccctcagccagttacc
ccctggaacgtgcaggaactgagacaagcagtcattaatggacccaatgtgcacccagga
gcctccatggtcatcaatgaggatggcagtcgcacagccctgagtgcggtggatgctaca
cagcgggaagctgtggccaaacagctcctgacaccagccacaggggctcctaagcctcag
gggacaaaaattgtgtgccggcatgtgaagaatggggacattctcctactgaaccggcag
cctactttgcacagaccctccatccaggcccaccgtgcccacattctgcctgaagaaaaa
gtcctacgccttcactatgccaactgcaaagcctacaatgctgactttgatggggacgag
atgaacgcccacttcccccagagtgagttgggcagagctgaagcctatgtcctggcctgc
actgatcagcagtatcttgttcccaaggatggccagccattggcaggactgattcaggat
cacatggtttcgggtgcaaacatgaccattcgggggtgctttttcacccgggaacagtac
atggagctggtgtaccgagggctcacagacaaagtgggacgggtgaagctctccccgccg
gccatcctgaagcccttcccattgtggacaggaaagcaggttgtgtcaaccctgctcata
aacataatcccagaggactacacccccctgaacttatctggaaaggcaaaaatcggcagt
aaagcctgggtgaaggaaacgccacggcctgttcctaactttgaccctaactccatgtgt
gagtcccaggtgatcatcaggggaggggagcttctttgcggggtgctggacaaggcacac
tacgggagctctgcctatggcttggtccactgctgctatgaggtctatggaggtgagacc
agcggaagggttctcacctgcctggcccgcctcttcactgcctacctgcagctctacaga
gggttcaccttgggtgtagaggacattttggttaagccagatgcagatgtaaagagacag
cacatcattgaagaatccacccagtgtggaccccgggctgtcagggctgcactgaacctg
ccagaagctgcgtcatgtgatgagatccaggggaaatggcaggatgcccatctgggcaaa
gatcagagggattttaacatgattgatatgaagttcaaggaggaagtgaaccattacagc
aacgagatcaacaaggcatgcatgcctttcggcttgcacagacagttccccgagaacaac
ctgcagatgatggtgcagtctggagccaaagggtcaaccgtgaacacgatgcaaatctct
tgcctgctgggccagattgagttggaaggtcggaggcccccactgatggcatctggcaag
tcactgccctgctttgagccttacgagttcacccccagggctggtggcttcgtcactgga
aggttccttactggtatcaagcctcctgagttcttctttcactgcatggcgggacgagaa
ggcctagtggatactgctgtcaaaaccagccgatctggctatctccaaaggtgcatcatc
aagcacctggaggggctggtcatccagtatgatctgacagtccgtgatagcgatggcagc
gtggtccagttcctgtatggggaggatggcctggacatccccaagacacagttcctgcag
cccaaacagttccccttcctggccagcaactatgaggtgataatgaaatccaagcatctt
catgaagttttatccagagcagatccccagaaagtgctccgccacttcaaagccattaaa
aaatggcatagcaagcattccggtgccctgctgagaagaggcgccttcctgagtttttcc
cagaagatccaggcagctgtgaaagctttgaacctcaagggcaagaacgagaatggccgc
agcccagaaacccagcagatgttacagatgtggtatgagttagatgagcagagccgaagg
aaataccagaagagggccgctccttgtcccgaccctagcctgtctgtgtggcgcccagac
atcttctttgcatctgtgtccgaaacatttgaaaaaaagattgatgactacagtgaggag
tgggcagctcaagcagagaggagttacaagaagtcagagctctctctcgacaggctgagg
accttactgcagctcaagtggcagcgctcgctatgtgacccaggagaagctgttggcctg
ctggccgcccagagcatcggggagccctccacacagatgacactgaacaccttccacttc
gctggcagaggcgagatgaatgtcaccctgggtattccaagactgagggagattctcatg
gtggccagtgccaacatcaagacacccatgatgagcgtgcctgtgttcaataccaagaaa
gcattgaagagagtgaagaacctgaagaagcagctcaccagggtgtgcctgggcgaggtg
ttgcagaaagttgatgtccaggagtccttccatatgggagaaaaacagaacagatcccgg
gtctatgagctccggtttcatttcctgccacatgcatattaccagcaggaaaagtgcctg
agacctgaggacatcttgcacttcatggaaaccagatttttcaaactattaatggaagcc
atcaaaaagaagaacagcaaagcatcagccttcagaagtgtgaataccagaagagctaca
cagaaagactttgatgatgctgaggactcagggaagagtcggagagaggaagaaggggat
gaagaggaggaggggaacattgtggatgctgaagctgaggagggagatgcggatgcgtct
gacaccagacgcaaggagaagcaagaggaagaggttgactatgagagtgaggaggaaggg
gaggaggaaatggaggaggaggatgcacaagacgaagggaacatcaacggcgaagatgcc
caccaggcccgtgagccaggcgaggaagagggttcagacctggagcaggagtcatcccag
aacgctgcccaccagcactccaggactcagggagctgaggcggtggaacgccggattcag
gctgtacgggaggcccactcattcattgaggactaccagtatgacacagaggagagcctg
tggtgccaggtgacgctgaagctcccgctgatgaagattcattttgacatgagctccttg
attgtgtccttggcccacaatgccattgtctatacaaccaagggcatcactcggtgcctc
ctgaatgaaacgaccaacagtgagaatgagaaggagcttgtgctgagcacagaagggatc
aacctccccgagatgtttaagtactccgaggtgctggacctgcaccgcctctactccaac
gacatccatgccatggccagcacttacggcatcgaggctgcactgcgggttattgagaag
gagattaaggatgtgtttgctgtgtatggcatcgcagtcgaccctcgccacctctctctg
gtcgctgactatatgtgctttgagggcgtttataagccgctcaatcgctttgggatccag
tcaagctcctcccctttgcagcaaatgacctttgaaaccagcttccagtttctcaagcag
gccaccatgatggggtcccatgatgaacttaagtcaccttcagcctgtctggtggtggga
aaagtcgtcaaaggcgggacaggcctgtttgagctcaagcagcctctaagatag
DBGET
integrated database retrieval system
