Phodopus roborovskii (desert hamster): 127236117
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Entry
127236117 CDS
T08852
Symbol
Smarcc1
Name
(RefSeq) SWI/SNF complex subunit SMARCC1 isoform X1
KO
K11649
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
Organism
prob
Phodopus roborovskii (desert hamster)
Pathway
prob03082
ATP-dependent chromatin remodeling
prob04714
Thermogenesis
prob05225
Hepatocellular carcinoma
Brite
KEGG Orthology (KO) [BR:
prob00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
127236117 (Smarcc1)
09150 Organismal Systems
09159 Environmental adaptation
04714 Thermogenesis
127236117 (Smarcc1)
09160 Human Diseases
09162 Cancer: specific types
05225 Hepatocellular carcinoma
127236117 (Smarcc1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
prob03021
]
127236117 (Smarcc1)
03036 Chromosome and associated proteins [BR:
prob03036
]
127236117 (Smarcc1)
Transcription machinery [BR:
prob03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
127236117 (Smarcc1)
Chromosome and associated proteins [BR:
prob03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
127236117 (Smarcc1)
PBAF complex
127236117 (Smarcc1)
GBAF(ncBAF) complex
127236117 (Smarcc1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SWIRM-assoc_2
SWIRM-assoc_3
SWIRM-assoc_1
SWIRM
Myb_DNA-binding
Myb_DNA-bind_6
HEAT_GCN1
BRCT_2
DUF919
SpeFL
Motif
Other DBs
NCBI-GeneID:
127236117
NCBI-ProteinID:
XP_051059521
UniProt:
A0AAU9YSK1
LinkDB
All DBs
Position
Unknown
AA seq
1103 aa
AA seq
DB search
MAATAGGGPGAAAGSVGAGGVAAASGLAVYRRKDGGPASKFWESPDTVSQLDSVRVWLGK
HYKKYVHADAPTNKALAGLVVQLLQFQEDAFGKHVTNPAFTKLPAKCFMDFKAGGTLCHI
LGAAYKFKNEQGWRRFDLQNPSRMDRNVEMFMNIEKTLVQNNCLTRPNIYLIPDIDLKLA
NKLKDIIKRHQGTFTDEKSKASHHVYPCPSSQEDEEWLRPVMRKDKQVLVHWGFHPDSYD
TWVHCNDVDAEIEDPPIAEKPWKVHVKWILDTDVFNEWMNEEDYEVDENRKPVSFRQRIS
TKNEEPVRSPERRDRKASANARKRKHSPSPPPPTPTESRKKSGKKGQASVYGKRRSQKEE
DEQEDLTKDMEDPTPVPNIEEVVLPKNVNPKKDSENTPVKGGTVADLDEQDEEAVTTGGK
EDEDPNKGDPSRSVDPGEDNVTEQTNHIIIPSYASWFDYNCIHVIERRALPEFFNGKNKS
KTPEIYLAYRNFMIDTYRLNPQEYLTSTACRRNLTGDVCAVMRVHAFLEQWGLVNYQVDP
ESRPMAMGPPPTPHFNVLADTPSGLVPLHLRSPQVPAAQQMLNFPEKNKEKPIDLQNFGL
RTDIYSKKTLAKSKGASAGREWTEQETLLLLEALEMYKDDWNKVSEHVGSRTQDECILHF
LRLPIEDPYLENSDASLGPLAYQPVPFSQSGNPVMSTVAFLASVVDPRVASAAAKAALEE
FSRVREEVPLELVEAHVKKVQEAARASGKVDPTYGLESSCIAGTGPDEPEKLEGSEEEKM
ETDSDGQQLEKAENKVENESDEGDKTQDGENEKNNEKEQDSEVSEDIKPEEKENEENKEL
TDTCKERESDTGKKKVEHEISEGNVATAAAAALASAATKAKHLAAVEERKIKSLVALLVE
TQMKKLEIKLRHFEELETIMDREKEALEQQRQQLLTERQNFHMEQLKYAELRARQQMEQQ
QHGQNPQQAHQHSGGPGLAPLGTAGHPGMMPHQQPPPYPLMHHQMPPPHPPQPGQIPGPG
SMMPGQPMPGRMIPTVAANIHPTGSGPAPPGMPPMPGNILGPRVPLTAPNGMYPPPPQQQ
PQPSPADGVPPPPAPGPPASATP
NT seq
3312 nt
NT seq
+upstream
nt +downstream
nt
atggccgcgacagcgggcggcggtccgggagcggcagcaggctccgtgggtgcagggggt
gtggcggcggcctcgggcctggccgtgtaccggaggaaggacgggggcccggccagcaag
ttttgggaaagcccggacacggtgtcccagctggattcggtgcgagtctggctgggcaag
cactacaagaagtatgttcatgctgatgctcctaccaataaagcactggctggactggtg
gtacagcttcttcagttccaagaagatgcctttgggaagcatgtcaccaacccagctttc
accaaactacctgcaaaatgttttatggatttcaaagctggaggcaccttgtgtcacatt
cttggggctgcttacaagttcaaaaatgaacaggggtggcggagatttgatcttcagaat
ccatcccgaatggaccgtaatgttgaaatgttcatgaacattgaaaaaaccttggtacag
aacaattgtctgactagacccaacatctacctcattccagacattgacttgaagttggct
aataaattgaaggatatcatcaaacggcatcaggggacatttactgatgagaaatcaaaa
gcttcccaccatgtttatccatgtccttcttcacaagaggatgaagagtggttgagacca
gtgatgagaaaagacaagcaggtgttggtacactggggctttcacccagacagctatgac
acttgggtccactgtaatgatgttgacgctgaaattgaagatccaccaattgcagaaaag
ccatggaaggttcatgtaaaatggattttggacacggacgttttcaatgagtggatgaat
gaagaggattatgaagtagatgagaataggaaaccagtcagttttcgtcagcgaatttca
acaaagaatgaagagccagtcagaagtccagagaggagagatagaaaagcatcagctaat
gcacgaaagaggaaacattccccttcacctccccctcctacacctacagaatccaggaag
aagagtgggaagaaaggacaagctagtgtttatgggaagcgtagaagtcagaaagaagaa
gatgagcaagaagatcttaccaaggacatggaagacccaacacctgtacccaatatagag
gaggtggttctccctaagaacgtgaacccaaagaaagatagtgaaaatacacctgttaaa
ggcggcacggtggcagacctagatgagcaggatgaagaagccgttacaacaggaggaaag
gaggatgaagatcctaacaaaggtgatcccagtcggtcagttgatccaggagaagataat
gtgacagagcagaccaatcacatcattattcccagctatgcatcatggtttgattataac
tgtattcatgtgattgaacggcgtgctcttcctgagttttttaatggaaaaaacaaatcc
aagactccagaaatatacttggcatatcgaaattttatgattgacacataccgtctaaat
ccccaagaatatttaaccagtactgcttgtcggagaaacctgactggagatgtgtgtgct
gtgatgagggttcatgccttcttagagcagtggggccttgttaactaccaagtagatcct
gaaagtcgacccatggcaatggggcctcctcctacccctcatttcaatgtgttagccgac
acaccctcaggccttgtgcctctgcatcttcgatcacctcaggtccctgctgctcagcag
atgttaaattttcctgaaaagaataaggaaaaaccaattgatttgcagaactttggtctt
cgaactgacatttactccaagaaaacactggcaaagagtaaaggtgctagtgctggaagg
gagtggacagaacaggagacccttctcctcctcgaggctctggaaatgtacaaggatgat
tggaataaagtctcagaacatgttggaagtcgtactcaggatgaatgcatccttcacttt
ttgaggcttcccattgaggacccataccttgaaaattcggatgcttcccttgggcctcta
gcttaccagcctgtccctttcagccagtccggaaacccagtgatgagtactgttgctttt
ttagcatctgtggttgatcctcgtgtggcatctgctgcagcaaaagcagcgttggaggag
ttttctcgggtccgagaagaagtaccactggaattagttgaagcacatgtcaaaaaagta
caagaagctgcgagagcttctggaaaggtggatccgacctatggcttggagagcagctgt
attgcaggcaccggtcctgatgagccagaaaaacttgaagggtctgaagaagagaagatg
gaaacagattctgatggtcagcagcttgaaaaggcagaaaacaaagtggaaaatgaatcg
gatgaaggtgataaaacgcaagatggagaaaatgagaaaaacaatgagaaggaacaagat
agtgaagttagtgaggatatcaaaccagaagaaaaggagaatgaagagaacaaggaactc
actgatacatgtaaagaaagagaaagtgataccgggaagaagaaagtggaacacgagatt
tctgagggaaatgtcgccacagccgcagcagctgctctcgcctcagctgctaccaaagcc
aagcacctggctgctgtggaagagagaaagatcaagtccctggtagctctcctggttgag
acgcagatgaagaaactagagatcaaacttcgacattttgaagagcttgaaactattatg
gacagagagaaagaggctctagaacaacagagacagcagttacttactgagcgccagaac
ttccacatggaacaattgaaatatgctgagctacgagctcgacaacaaatggaacagcag
caacatggccagaaccctcagcaagcacaccagcactcaggagggcctggtctggcccca
cttggaacagcagggcaccctggcatgatgcctcatcagcagcccccaccctaccctctg
atgcaccatcagatgccgccaccccatcctccccagccaggtcagataccaggccctggc
tccatgatgcctggacagcccatgccaggccgcatgattcccactgtggcagccaacatt
catcctactgggagtggccctgcccctcccggtatgcctccaatgcctggaaacatctta
ggacccagggtacccctcacagcaccaaatggcatgtatcctcctccaccacagcagcag
ccacagccttcaccagcagacggggttcctccacctcctgctccaggcccaccagcctcg
gccactccttag
DBGET
integrated database retrieval system
