KEGG   Phodopus roborovskii (desert hamster): 127236129
Entry
127236129         CDS       T08852                                 
Symbol
Sec13
Name
(RefSeq) protein SEC13 homolog
  KO
K14004  protein transport protein SEC13
Organism
prob  Phodopus roborovskii (desert hamster)
Pathway
prob03013  Nucleocytoplasmic transport
prob04141  Protein processing in endoplasmic reticulum
prob04150  mTOR signaling pathway
prob05014  Amyotrophic lateral sclerosis
Brite
KEGG Orthology (KO) [BR:prob00001]
 09120 Genetic Information Processing
  09122 Translation
   03013 Nucleocytoplasmic transport
    127236129 (Sec13)
  09123 Folding, sorting and degradation
   04141 Protein processing in endoplasmic reticulum
    127236129 (Sec13)
 09130 Environmental Information Processing
  09132 Signal transduction
   04150 mTOR signaling pathway
    127236129 (Sec13)
 09160 Human Diseases
  09164 Neurodegenerative disease
   05014 Amyotrophic lateral sclerosis
    127236129 (Sec13)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:prob03019]
    127236129 (Sec13)
   04131 Membrane trafficking [BR:prob04131]
    127236129 (Sec13)
Messenger RNA biogenesis [BR:prob03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    Nuclear pore complex
     127236129 (Sec13)
Membrane trafficking [BR:prob04131]
 Protein recycling
  Rab GTPases and associated proteins
   Rab11 associated proteins
    127236129 (Sec13)
 Endoplasmic reticulum (ER) - Golgi transport
  Forward pathways
   Coat protein complex II (COP-II)
    127236129 (Sec13)
 Autophagy
  Other autophagy associated proteins
   SEACAT/GATOR2 complex
    127236129 (Sec13)
SSDB
Motif
Pfam: Beta-prop_THOC3 WD40 Beta-prop_WDR5 Beta-prop_WDR3_1st WD40_Prp19 WD40_CDC20-Fz WD40_WDHD1_1st Beta-prop_CAF1B_HIR1 Beta-prop_EML_2 Beta-prop_WDR3_2nd Beta-prop_EIPR1 WD40_MABP1-WDR62_2nd WDR55 Beta-prop_IFT122_1st Beta-prop_RIG_2nd EIF3I WD40_Gbeta ANAPC4_WD40 Beta-prop_WDR41 Beta-prop_WDR75_1st Beta-prop_WDR90_POC16_2nd Beta-prop_Vps41 Beta-prop_EML Beta-prop_WDR36-Utp21_1st NBCH_WD40
Other DBs
NCBI-GeneID: 127236129
NCBI-ProteinID: XP_051059541
UniProt: A0AAV0A3P8
LinkDB
Position
Unknown
AA seq 322 aa
MVSVINTVDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPV
WQVAWAHPMYGNILASCSYDRKVIIWKEENGTWEKTHEHSGHDSSVNSVCWAPHDYGLIL
ACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSLIDQPSGQKPNYIK
KFASGGCDNLIKLWREEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRV
FIWTCDDASGNMWSPKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLWKESVDGQWVCI
SDVNKGQGSVSASITEGQQNEQ
NT seq 969 nt   +upstreamnt  +downstreamnt
atggtgtcagtgatcaacaccgtggacacctctcatgaggacatgattcatgatgcccag
atggactattatggcacccgcctagcaacctgctcttcggacaggtctgtcaaaatcttt
gatgtacgaaatggagggcagatcctcattgcagacctcagaggacatgaggggccagta
tggcaagtagcctgggcccaccccatgtatggcaatatcctggcttcctgttcctatgac
cggaaagttattatctggaaggaggaaaacggcacttgggagaagactcatgagcattca
ggacatgactcctcagtgaactctgtatgctgggcccctcacgactatggcctgatttta
gcctgtgggagctccgatggggccatctccctgctgacctatacaggggaaggccagtgg
gaagtgaagaagattaacaacgctcacacgattggctgtaatgctgtcagttgggcccct
gctgttgtgcctggaagcctcatagaccaaccatcagggcagaagcccaattacatcaag
aagtttgcatcaggtggctgtgacaacctcatcaagctatggagggaggaagaagatggc
cagtggaaggaggagcagaagctagaggcacacagcgactgggttcgagacgttgcctgg
gccccctccattggtctgcccaccagcaccattgccagctgctctcaggatggtcgagtg
tttatttggacctgcgatgatgcctcaggcaatatgtggtcacccaaactcctgcacaag
ttcaacgatgttgtgtggcatgtgagctggtccatcacagcaaatatcctggctgtgtca
ggtggagacaataaggtgaccctgtggaaagaatctgtggatggacagtgggtgtgcatc
agtgatgtcaacaagggccagggttccgtgtcagcctccatcacagaaggccaacagaat
gagcagtga

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