Phodopus roborovskii (desert hamster): 127236468
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Entry
127236468 CDS
T08852
Symbol
Ddx18
Name
(RefSeq) ATP-dependent RNA helicase DDX18
KO
K13179
ATP-dependent RNA helicase DDX18/HAS1 [EC:
5.6.2.7
]
Organism
prob
Phodopus roborovskii (desert hamster)
Brite
KEGG Orthology (KO) [BR:
prob00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
prob03041
]
127236468 (Ddx18)
03009 Ribosome biogenesis [BR:
prob03009
]
127236468 (Ddx18)
Enzymes [BR:
prob01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
127236468 (Ddx18)
Spliceosome [BR:
prob03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
127236468 (Ddx18)
Ribosome biogenesis [BR:
prob03009
]
Eukaryotic type
90S particles
Helicases
127236468 (Ddx18)
Pre-60S particles
127236468 (Ddx18)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
CTE_SPB4
ResIII
Motif
Other DBs
NCBI-GeneID:
127236468
NCBI-ProteinID:
XP_051060098
UniProt:
A0AAV0A2R5
LinkDB
All DBs
Position
Unknown
AA seq
657 aa
AA seq
DB search
MSHLQMKLLRKKIEKRNVKLRQRNLKLQEASDPSVSQPQNGDVPKEGKAKKAKKHSVSAG
SAEAQSGGLPEETVGHSEAKNSPQKPTTLTNGETAATPSPDSEPKKKKKKRKRKMANDAG
PDTKKAKPAESTGTQEEAESGGEKPNDREVPSLPLGLTGAFEDTSFASLSNLVNENTLKA
IEEMGFKRMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIPVIELIVKLKFMPRNGTG
VLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQKLVNGINIIVATPGRLL
DHMQNTPGFMYKNLQCLVIDEADRILDVGFEEELKQIIKLLPVRRQTMLFSATQTRKVED
LARISLKKEPLYVGVDDDKEVATVDGLEQGYVVCPSEKRFLLLFTFLKKNRKKKVMVFFS
SCMSVKYHYELLNYIDLPVLAIHGKQKQNKRTTTFFQFCNADSGILLCTDVAARGLDIPE
VDWIVQYDPPDDPKEYIHRVGRTARGLNGRGHALLILRPEELGFLRYLKQSKVPLNQFDF
SWSKVSDIQAQLEKLIEKNYFLHKSAQEAYKSYIRAYDSHSLKQIFNVNNLNLPQVALSF
GFKVPPFVDLNVSSHDGKLKKRGGGGGFGYQKTKKVEKSKIFKHISKKTTDRRQFSH
NT seq
1974 nt
NT seq
+upstream
nt +downstream
nt
atgtcgcacttacagatgaaactcctgcgcaagaagatcgagaagcggaacgtcaagctg
cggcagcggaatctgaagctgcaagaagcatcagacccaagcgtatcacagcctcagaat
ggagatgtgcctaaagaagggaaagctaagaaggccaaaaagcattctgtgagtgcgggc
tcagcggaagcacagagtggaggcctgcctgaagagacagtgggacactcggaagctaaa
aactcaccgcagaaacctaccactttaacgaatggagagacagccgcgactccatctcct
gactcagaaccgaagaagaaaaagaagaagagaaagaggaaaatggcaaatgatgcggga
cctgacaccaagaaagcaaaaccggcagaaagcactgggactcaagaggaagcagaaagt
ggcggggagaagccgaatgacagggaggtgcccagcctgcccctgggactgacaggcgct
tttgaggacacttcctttgcatccttgtctaaccttgtcaatgagaacactctgaaagct
atagaagaaatgggcttcaagcgcatgactgagatccagcataaaagtatcaggccactt
ctggaaggcagggatcttctggcagccgcgaaaacagggagtggtaaaaccctcgctttc
ctcatccccgtgatcgagctcattgtcaagttgaagttcatgcctaggaatggaacagga
gtcctgattctctctcctaccagagaactggccatgcagacctttggcgttctaaaggaa
ctgatgacacaccatgtccacacgtatgggctgatcatgggtggcagtaacaggtctgct
gaagcacagaagctcgtcaatggcatcaacatcatcgtggccaccccaggccggctccta
gaccacatgcagaatactccggggttcatgtacaagaacctccagtgtctggttattgat
gaggctgatcgtatcttggatgtcgggtttgaagaagaattaaagcaaattattaaactt
ttgccagtccgcaggcaaaccatgctcttttcggccacacaaactcgaaaagttgaagac
ttggcaagaatttccctgaaaaaagagccattgtatgtgggtgttgatgacgataaagag
gttgccaccgtggatgggcttgagcagggatatgttgtgtgtccctctgagaagaggttc
cttctgctcttcacattccttaaaaagaaccggaagaagaaggtgatggtcttcttttcc
tcgtgtatgtccgtgaagtaccactatgagctactcaactacattgacctgcctgtcttg
gccatccatggaaagcaaaagcaaaataagcgaacaaccacgttcttccaattctgcaac
gcagattcagggatactgctgtgcacagatgtggcggccagaggactggacatccctgaa
gtggactggattgttcagtatgaccctcctgatgaccccaaggaatatatccatcgtgtg
ggtagaacggccaggggtctgaatggaagagggcacgccctgctcatcctacgccctgaa
gaattgggtttccttcgttacctgaagcaatccaaggttccactgaatcagtttgacttc
tcctggtctaaagtgtctgatattcaggctcagctggaaaagctgatcgaaaagaactac
tttctccataagtccgcacaggaagcttacaagtcctacatacgagcctatgactcccac
tcgctcaagcagatcttcaatgtgaacaacttaaatttgcctcaggtggctctgtctttt
ggttttaaagtccctccttttgttgatctgaacgtgagcagccacgatggcaagcttaaa
aagagaggaggtggcggcggattcggctaccagaaaacaaagaaagtggagaagtccaag
atctttaaacacatcagcaagaagacgacagaccgcaggcaattctctcactga
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