Phodopus roborovskii (desert hamster): 127237627
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Entry
127237627 CDS
T08852
Symbol
Scaf8
Name
(RefSeq) SR-related and CTD-associated factor 8 isoform X1
KO
K13191
RNA-binding protein 16
Organism
prob
Phodopus roborovskii (desert hamster)
Brite
KEGG Orthology (KO) [BR:
prob00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
prob03021
]
127237627 (Scaf8)
03041 Spliceosome [BR:
prob03041
]
127237627 (Scaf8)
Transcription machinery [BR:
prob03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
127237627 (Scaf8)
Spliceosome [BR:
prob03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA binding proteins (RBPs)
127237627 (Scaf8)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CID
RRM_1
DUF3525
Motif
Other DBs
NCBI-GeneID:
127237627
NCBI-ProteinID:
XP_051061936
LinkDB
All DBs
Position
Unknown
AA seq
1270 aa
AA seq
DB search
MEAVKTFNSELYSLNDYKPPISKAKMTQITKAAIKAIKFYKHVVQSVEKFIQKCKPEYKV
PGLYVIDSIVRQSRHQFGQEKDVFAPRFSNNIISTFQNLYRCPGDDKSKIVRVLNLWQKN
NVFKSEIIQPLLDMAAGIPPPVVTPVLASTTAAMSNTPGTPVTPVTPANVVQGLPDPWVS
QIANTDTLAAVAQILQSPQGQQLQQLIQTLQIQQQKPQPSILQALDAGLVVQLQALTAQL
TAAAAAANSLTPLDQGVSFNKKLMDRFDFGEDSEHSEESKKEMPTPQLSHVSESVNNSIF
HQIAEQLQQQNLEHLRQQLLEQQQPQKQVTPQDSQEGTFGSEHSASPSQGSSQQHFLEPE
ANLDDSIDIQQQDMDIDEGQDVAEEEIFEPEAKKVAVRSRSRTHSRSRSRSPRKRRSRSR
SGSRKRKHRKRSRSRSRERKRKSSRSYSSERRAREREKERQKKGLPPVRSKTLSVCSTTL
WVGQVDKKATQQDLTNLFEEFGQIESINMIPPRGCAYVCMVHRQDSFRALQKLSSGSYKI
GSKVIKIAWALNKGVKTEYKQFWDVDLGVTYIPWEKVKVDDLDGFAEGGMIDQETVNAEW
ETVKTSEPVKETVQTTQSPTPVEKETVVTTQAEAFPPPVAMLQIPVAPAVPAVSLVPPAF
PVSMPVPPPGFSPMPPPPFLRASFNPSQPPPGFMPPPVPPPVVPPPAIPPVVPTSLVQPP
LSMTPDTVKDAGFGGLVLPGGSVASSLAPSGLPAGNVFNPPNKVEPEEKVPHLSEHQIPS
AENTRPVIPSDIPSSAAMLAQPPGPANTSGILCVQRPNVSSNSEILGVRPANVSSSAAIL
GAQPPNILNNSGILGIQPPNVSSGSGLLGVLPPNLPNNSGLVGLQPPNVTNPPGLMGTQP
PIGPQNLPPLTIPAQRVPALPMLDIRPGLIPQAPGPRFPLLQPGIPPQRGIPPPAVLDAA
LHPPPRGPFPPGDLFSQPERPFLAPGRPSLDNVPNPDKRIPLGNDSIQQEGDRDYRFPPV
ETREGISRPPPVDVRDMVGRPIDPREGPGRPPLDGRDHFGRAPVDMRENLGRPGLDHLGR
RDHFGFPPEKPWGLRDFDEREHRVLPVFGGPKGLHEERGRFRAGSYRFDPRSGPWNRGFG
PEVPRDFDDRRRPWERQRDRDDRDFDFCREINGNRLGRDRIQNTWVPPPHARVFDYFEGA
TSQRKGDNVPQVNGENTERHAQPPPLPVQKDPELYDKLASSGDVDKEESGTVAGVESEAM
VVESTETEGT
NT seq
3813 nt
NT seq
+upstream
nt +downstream
nt
atggaggccgtgaagaccttcaacagcgagttatattcgctgaatgactataaaccaccc
atttctaaagcaaaaatgacccagattacaaaggcagccatcaaagccattaagttctat
aaacacgtggtacaaagtgttgagaaattcattcagaaatgtaaaccagaatacaaggtc
cctggactctatgtcattgactccattgtgcggcaatcccggcatcagtttggtcaagag
aaggatgtgtttgcacccagatttagtaataatatcattagcactttccagaatttatat
cgttgccctggggatgacaagagtaaaatagtgagagtattaaacttatggcagaagaat
aatgtttttaagagtgagattatccagccccttctggatatggcagcagggattcctccc
cccgttgtcacccctgttttggccagcaccactgcagctatgagcaatactccaggaacc
cctgtgacacctgttactccagccaatgtggtccaaggcttaccggatccatgggtgtct
cagatagcaaacacagacacactggcagctgtggctcagatcttacagagccctcaaggt
cagcagcttcagcagctaatacagaccttacagatccaacagcagaagccccagccttcc
atcctgcaggccctggatgctggccttgtggttcagttgcaggcactgacggcacagctt
acagctgcagctgcagcagccaactcgcttacacccttggatcagggcgtctctttcaac
aagaagttgatggacaggtttgattttggggaagattctgagcatagtgaagaatccaaa
aaggaaatgcctactcctcaactttctcatgtttccgaatctgtgaacaactccatcttc
catcagatagcagagcagctgcagcagcagaacctggagcacctgcggcagcagctcttg
gagcagcagcagccccagaagcaggtaactcctcaagatagccaggaaggaacgtttggg
tcagagcactcagcttcaccctcacaaggaagcagccagcagcattttctggaacctgaa
gcaaatttagatgattctatagatattcagcaacaggatatggatattgatgaaggacaa
gatgttgctgaagaggagatctttgaaccagaagctaagaaagtagctgttcgctcaaga
tcaagaactcattcgcgatcgcgatcaagatcaccaagaaaaagaaggtccaggtcacga
tctggctctcgaaagcgaaaacacaggaagcgatcccgctcccgctctagagaacgaaag
agaaaatcatcacggtcgtattccagtgaaagaagagccagagagagggagaaagaacgc
caaaaaaagggattgcctcccgtcagatccaaaacgctgagtgtgtgcagcaccaccctc
tgggttggccaagtggataagaaggctacacagcaggatttaaccaacctttttgaggag
tttggacagattgaatctattaatatgattccacccaggggctgtgcatatgtctgtatg
gttcatcggcaagattcatttcgggctcttcagaaactgagttcaggatcctataaaatt
ggttccaaggtcattaagattgcctgggctttgaacaaaggtgtaaagacagaatacaaa
cagttctgggatgtggatcttggagtcacatatataccctgggaaaaagttaaagtggat
gacttggatggctttgcagaaggaggcatgatagaccaggaaactgtaaatgctgaatgg
gaaactgtgaaaacctcagaaccggtcaaagaaacggtccagactacacagagtccaact
ccggttgaaaaggagactgtggtcacaacacaggcagaggctttccctccacctgtggcc
atgctgcagatcccagtagcgccagcggttcctgcagttagtttagtcccaccagcgttt
cccgtgtcgatgccggtcccccctcctggattcagccccatgcctccacctccttttcta
cgagcgagttttaatccttcacaaccacctcctggttttatgccacctccagttcccccg
cctgtggtacctcccccagcaattccaccggtagttccgacatctttggtgcagccacca
ttgtccatgaccccagacactgtgaaagatgctggatttggtggccttgtcttaccagga
ggctctgtcgccagcagtctggctccttcaggtcttccagctgggaatgtttttaatcct
cccaataaagtggagcctgaagaaaaagtacctcacctttcagaacaccagatcccttct
gctgaaaacaccagaccagtgattccaagcgatattccaagtagtgctgcaatgttagca
cagcctcctggccccgcaaacacctctgggatcctgtgtgtgcagagaccaaatgtgtca
agtaattctgaaattctgggggttcggccagctaatgtttccagtagtgctgcgattctt
ggagcccagccaccaaatattctaaataactctggaattttgggcatacagccaccaaat
gtttcaagtggctctggacttcttggggtactgcctccaaacttgcccaacaactctgga
cttgtaggactacagccaccaaatgttacaaatcctcctggacttatgggaacacagcca
ccgattggacctcaaaacttacctcccttaactatcccagctcaaagggtgcctgcattg
ccaatgttagacatccgtccaggactgataccacaggctcctggaccaagattcccttta
ctacagcctggaattcccccccagaggggtatccccccaccagcggtacttgatgcagct
cttcatccgccaccccgtggacctttccctccaggagatcttttcagtcagccagaaaga
ccttttctggctcctggaagaccaagtctagacaacgttcccaacccagataaacggata
ccacttgggaatgacagtattcagcaggaaggcgatagagactaccggtttcctcctgta
gaaacaagggaaggcatcagtagaccgcccccggtggatgttagggatatggttgggcga
cctatagatcccagagaaggcccaggaaggcctcctttagatggtagggatcattttgga
agagctcctgtggacatgagagagaatcttgggaggccaggtctagatcatcttggtcga
agagaccactttggctttcccccagagaagccgtgggggcttagagattttgatgagaga
gagcatcgagttctgcctgtctttggtggtccaaaaggcttacatgaagaaagaggtaga
tttcgggctggaagttaccgatttgatcctagaagtggtccttggaacagaggatttggg
ccagaagttccccgagattttgatgaccgaagaagaccctgggagaggcagagggatagg
gatgacagagattttgatttctgcagagaaattaatggaaatcgtcttggacgagataga
attcaaaacacttgggtcccccctcctcatgctcgggtttttgattatttcgaaggggcc
acttcgcagcgaaaaggtgataatgtgcctcaagttaatggtgaaaatacagagagacat
gctcagccaccgcctttaccagtgcagaaggaccctgaactctatgacaaactggcgtcg
tcaggggacgtagacaaggaggagagcggcacagttgctggtgtagaaagtgaagcaatg
gtggttgagagcacagagactgaggggacataa
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integrated database retrieval system
