Phodopus roborovskii (desert hamster): 127237669
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Entry
127237669 CDS
T08852
Name
(RefSeq) polyadenylate-binding protein 1
KO
K13126
polyadenylate-binding protein
Organism
prob
Phodopus roborovskii (desert hamster)
Pathway
prob03015
mRNA surveillance pathway
prob03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
prob00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
127237669
09123 Folding, sorting and degradation
03018 RNA degradation
127237669
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
prob03019
]
127237669
03041 Spliceosome [BR:
prob03041
]
127237669
Messenger RNA biogenesis [BR:
prob03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
127237669
mRNA cycle factors
Stress granule specific factors
127237669
Spliceosome [BR:
prob03041
]
Complex C
Other components
Complex C specific factors
127237669
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_1
MLLE
RRM_10
RRM_5
RRM_occluded
YflT
POP1_C
Motif
Other DBs
NCBI-GeneID:
127237669
NCBI-ProteinID:
XP_051061995
LinkDB
All DBs
Position
Unknown
AA seq
644 aa
AA seq
DB search
MNPSDPSYSLASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVYRDRTTRRSLGYASVNFQ
QLEDAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFVKNLDRSIDSKALYDTFS
AFGNILSCKVVCDENGSKGYGFVHFETQEEAERAIEKMNGMFLNDRKVFVGRFKSRRDRQ
AELGARAKEFTNVYIKNLGDDMDDERLQGLFSKFGPALSVKVMTDESGKSKGFGFVSFER
HEDARKAVDEMNGKDLNGKQIYVGRAQKKVERQSELKHKFGQMKRDKHKVEQAPHESSSA
RCQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVTMEGGRSKGFGFVCFSSPEEATKA
VTEMNGRIVATKPLYVALAQRKEERQAHLSHQYIQRMASTTALSSPVINPFQPAQAPSAY
FMTTTSQTQNRGAYYAPHPTAPQGLGPCGSAQGARAHPFPNLSGTIQPSTIPSFSTAGPA
SSQGLRIMSTHRAASISTQMMASHPIAAAAPAARAVPQYKYTAGVRNPPQHLSTQPQATT
QRSAVPAQGKASLTASMLASASPQAQKQMLGEWLFSLIQAMHPALAGKITGMLLEIDNLE
LRHMLESPECLHTKIDEAIAVLQAHQAKESPQQALGSVAGVPTA
NT seq
1935 nt
NT seq
+upstream
nt +downstream
nt
atgaaccccagcgaccccagctactcgttggcgtccctctacgtgggggacctgcaccca
gacgtgaccgaggcgatgctctatgagaagttcagccctgcggggcccatcctctccatc
cgcgtctacagggacaggaccacccgccgctcgctgggctacgcgtccgtcaacttccag
cagctggaggacgccgagcgggccctggacaccatgaacttcgacgtgatcaagggcaag
ccggtgcgcatcatgtggtcccagcgggacccgtcgctgcgcaagagcggagtgggcaac
atcttcgtgaaaaacctggaccgatccatcgacagcaaggcgctgtacgacacgttttcc
gccttcggcaacatcctgtcgtgcaaggtggtgtgtgacgagaacggctccaagggctac
ggcttcgtgcacttcgagacgcaggaggaggccgagcgcgccatcgagaagatgaacggc
atgttcctgaacgatcgcaaagtgtttgttgggcgatttaagtctcgcagagacaggcag
gccgagcttggagccagggctaaggagtttaccaacgtatacatcaagaacctgggagac
gacatggatgacgagcggctccagggtctcttcagcaaatttgggcccgccttaagtgtg
aaagtcatgaccgacgagagcgggaagtccaaaggattcggattcgtaagctttgagagg
cacgaggacgcgcggaaggccgtggacgagatgaacgggaaagacctcaacgggaagcag
atttacgttggccgggctcagaagaaagtggagcggcagagtgaactgaagcacaaattc
ggacagatgaaacgagacaagcacaaggtggagcaggcaccgcacgagagcagcagcgcc
aggtgccaaggggtcaatctttacgtgaaaaacctcgacgacggcattgatgacgagcgg
ctccgcaaggagttttcgccctttggcaccatcactagcgccaaggttaccatggagggc
ggccgcagcaaagggtttggttttgtctgtttctcctctccggaggaagccactaaagca
gttacggaaatgaatggtagaattgtggccaccaagccactctacgtagctttagcccaa
cgcaaagaggagcgccaggctcacctcagccatcagtatattcaaaggatggcaagtacc
actgcattatccagcccggtcataaaccctttccagccagcgcaggctccttcagcttac
ttcatgacaactacatcacagactcagaaccgcggagcgtactatgctcctcacccaacc
gctccccagggactgggtccctgtgggagtgctcagggtgccagagctcatccattccca
aatttgtctggcaccatccagccatctactattccatcgtttagtactgctggaccagct
tcctcccagggtctacgcattatgtcaacacaccgtgctgccagcatatccacgcagatg
atggcttcacatcccatagctgcagctgctcccgctgcccgcgcagttccccagtataaa
tatactgctggagtccggaatccccctcagcatcttagtacacagccacaagccaccacg
cagcggtctgctgttccggcccaaggtaaagcgtctttgactgcctccatgctggcgtct
gcttctccccaagcacagaagcaaatgttaggggagtggctgttttcccttattcaagcc
atgcaccctgccctggctggtaaaatcacgggcatgctgttggagattgataacttagaa
ctacgccacatgctcgagtctccagagtgtctccacaccaaaatcgatgaagccatagct
gtgctacaagctcaccaagccaaagagtctccccagcaggcactgggaagtgtcgctggg
gttccaactgcttaa
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