Phodopus roborovskii (desert hamster): 127237693
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Entry
127237693 CDS
T08852
Symbol
Topbp1
Name
(RefSeq) DNA topoisomerase 2-binding protein 1 isoform X1
KO
K10728
topoisomerase (DNA) II binding protein 1
Organism
prob
Phodopus roborovskii (desert hamster)
Pathway
prob03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
prob00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
127237693 (Topbp1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
prob03032
]
127237693 (Topbp1)
03400 DNA repair and recombination proteins [BR:
prob03400
]
127237693 (Topbp1)
DNA replication proteins [BR:
prob03032
]
Eukaryotic type
DNA Replication Initiation Factors
Other initiation factors
127237693 (Topbp1)
DNA repair and recombination proteins [BR:
prob03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-B complex
127237693 (Topbp1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
BRCT
PTCB-BRCT
TopBP1_BRCT0
BRCT_2
RTT107_BRCT_5
LIG3_BRCT
BRCT_TopB1_SLF1
ECT2_BRCT0
Motif
Other DBs
NCBI-GeneID:
127237693
NCBI-ProteinID:
XP_051062024
LinkDB
All DBs
Position
Unknown
AA seq
1537 aa
AA seq
DB search
MSRNDQEPFFVKFLKSSDNSECFFKALESIKELQSEDYLQIITEEEALKIKENDRSLYIC
DHFSGAVFDHLKQLGCRIVGPQVVTFCMHHQQCVPRAEHPVYNMIMSDITISCTSLDKDK
REEVHKYVQMMGGRVYRDLNVSVTHLIAGEVGSKKYLVAANLKKPILLPNWIKTLWEKSQ
EKKITRYTDINMEDFKCPIFLGCIICVTGLNGIHRKTVQQLTTKHGGQYMGQLKMNECTH
LIVQEPKGQKYECAKRWNVHCVTLQWFHDSIEKGFCQDESIYKAEARSEIKTVPDTSTPT
AQGNAAAESRTLADVSHISNINSSCINETMFSSTTGKLECTLEDLENLDISVFQAPEDLL
DGCRIYLCGFSGRKLDKLRRLINSGGGVRFNQLNEDVTHVIVGDYEDDLKQFWNKSSHRP
HVVGAKWLLECFSKGFMLPEEPYVHTNYQPAAIPVSDQPENQTTVLEKNSIFSKKDFTPN
EKFQQTDEDLLSQYVNNDSTLVEAKPSESVELEVGPCSDSTQVEPCDESTHISVQEEDQS
SVSHCLLDGSAVPEEGLFSQKSFLVLGFSIENECNVVNIIRQHAGKIVSLSSRIVADFAV
VPLLGCEVEATVGEVVTNTWLVTCIDYQTLVDPKSNPLFTPVPVMSGMTPLKDCVISFSQ
CVGAERDSLVFLANHLGASVQEFFVRKSSAKKGMLASTHLIVKEPFGSKYEAAKKWSLPA
VTISWLLETARMGKRADECHFLVDSAPKQEQVLETKLPNGVNPNPDSPAHPDPHLDMHRK
VAVTPLDMKRFQSKAFHAVLSQHCKQGSVSSAAGQPPTREPSLHLDTPSKFLSKDKLFKP
SFDVTDALAALETPRATTQKRKLSSPLSEVIVRNLKVALANSSRSTSTLSASPQPKGTHL
EEEEGPKPLDEVVVCVSKKLSKKQSELNGLAASLGAEYRWSFDESVTHFIYQGRANDSNR
EYKSAKERGVHIVSEHWLLECAQEYKHLPESLYPHTYNPKMSLDISTVQDGWLCNSRVPS
AVPASKDDEPDHLSVEENETNSMVMDNKESGLLNGNGRNDCKGGYGDASNLGTLEMAAEG
SQVGALTQALEMRENFQKQLQEIMSATCIVKMQAQRNCLSRSSCNSASSTPDSARSARSG
RSRVLEALRQSRQIVPDINTEPSQNEQIIWDDPTAREERARLASNLQWPSYPTQFSELQV
DVKKLDDSPSQEPVYHSEIAEQALCVTEAPEHPIPEEPETPATDKHPVPVPQAPSIAFPL
AKPPVAPQTMDKIETVEESHEKLKQYVFQMSSLNSQERIDYCHLIKKLGGSVIEKQCSDP
NCTHMVVGYPLRNEKYLASMAAGKWVLHRSYLEACRTAGCFVQEEDYEWGSSSILDALTD
VTEHQQKLALAAMRWRKRIQQRQESGIVEGAFSGWKVILRVDRPREAGFKRLLQAGGAKV
LPGHPVPLFNEATHLFCDFNKLKPDDCRVFIAEAAAQNMACLKTEYIADYLMLESPPCAD
NYRLSEAAFLLNKESGPGLSQKRRAPAENIIKRPRVH
NT seq
4614 nt
NT seq
+upstream
nt +downstream
nt
atgtccagaaatgaccaagaaccgttttttgtgaagtttttaaagtcttcagacaattca
gaatgtttttttaaagctcttgagtcaataaaggaattacagtcagaagattatcttcag
attattacagaggaggaagcattgaagataaaggaaaatgacagatcactttatatctgt
gaccacttcagtggtgctgtatttgatcaccttaaacagcttggctgcagaattgttggt
cctcaagtagtcacattttgtatgcaccaccagcagtgtgtcccaagagctgagcatcca
gtttacaatatgattatgtctgatataaccatatcttgtacaagcctggataaagacaaa
agggaagaagttcataaatatgtacaaatgatgggtggacgagtgtacagagacctgaat
gtatcagtcactcaccttattgcaggagaagttgggagcaaaaaatacctagttgctgct
aatctgaagaaaccaattttgcttcctaattggataaaaacactttgggagaagtcacaa
gagaaaaaaataaccagatacactgacataaacatggaagactttaaatgtcctattttt
cttggttgcattatctgtgtgactggcttaaatggtatacacagaaagacagttcagcaa
ctcacaactaagcacggaggccagtacatggggcagctgaagatgaatgaatgtacacac
ctcattgtccaagaaccaaaaggacaaaaatatgaatgtgccaagagatggaatgtgcac
tgtgtgaccctgcagtggtttcatgacagtattgagaaaggcttttgtcaggatgaatct
atctacaaggccgaagccagatcagaaataaagacggtgcctgatacttcaactcccact
gctcagggcaatgcagcagctgaaagtcgcacgcttgcagatgtcagccatatatccaac
ataaatagcagctgtataaatgaaacaatgttcagttcaactactggcaaacttgaatgt
acacttgaagacctagaaaatctggacatcagtgtgtttcaagcacctgaagatttgcta
gatggctgtcggatatacctttgtggttttagtggcagaaagctagataagctaagaagg
cttattaacagtggtggtggagttcgatttaatcaacttaatgaagatgtaactcatgta
attgtgggagattatgaggatgacctgaagcagttttggaacaaatcatcccacaggcct
catgtagtgggagcaaagtggttgctggagtgttttagtaagggattcatgctccctgaa
gagccatatgtccacactaactaccagccagctgcaattccagtttcagatcagcctgaa
aaccagacaactgtcttggaaaagaacagcatattctctaagaaagattttactcctaat
gagaagttccagcaaactgatgaggatctgctctctcagtatgtaaataatgactccaca
ttagtggaggctaagccatctgaatctgtagagcttgaagttgggccttgcagtgattct
actcaagttgagccctgtgatgagtccactcacatttctgtgcaagaggaagaccagtct
tcagtcagccattgcctcctggatggctcagcagttcctgaagaaggcttatttagccaa
aagagcttccttgtgttgggttttagtattgaaaatgaatgtaatgttgtaaacatcata
agacaacatgctggaaagattgtgtccctttccagcagaattgttgctgactttgctgtg
gttccgctgctcgggtgtgaagttgaggcaactgtgggagaagttgttacaaatacgtgg
ctggttacatgtatagattaccagacactagttgatcccaagtccaatcccctcttcaca
ccagtgccagtaatgtcgggaatgactcctttgaaggactgtgttatttccttcagtcag
tgtgttggagcagagagagattccttggtattcctagcaaatcatcttggagcaagtgtt
caagaattctttgttcgcaaatccagtgcaaaaaaaggtatgctcgccagtacacatctt
atagtgaaagaaccatttggctccaaatatgaagctgcaaagaagtggagtttgccagca
gtcactatctcatggctcttagaaactgctagaatgggaaagagagcagatgaatgccat
tttctggttgacagtgcacctaaacaagaacaagtattagaaactaagctaccaaatgga
gtgaatccaaatccagactctccagcacaccctgacccacatctggacatgcacagaaaa
gtggctgttacacctttggatatgaagcgctttcagagtaaagctttccatgctgtccta
tcacagcactgtaagcagggttccgtctcttcagcagcaggacagccacctacgagggag
ccctccttgcacctggacacaccatcaaagtttctgtccaaggacaaacttttcaagcca
tcttttgatgtgacggatgctcttgcagccttggaaaccccaagagctactacccagaag
aggaaactgagctcaccactctctgaagtcattgtcagaaatctgaaagttgctttggca
aatagttcccgaagcaccagcactctttctgccagtcctcagccaaagggtacccatttg
gaagaggaagagggtcccaaaccacttgatgaagttgtggtgtgtgtgagtaaaaagctc
agtaagaagcagagtgaactaaatgggcttgcagcctcactgggagcagagtacaggtgg
agttttgatgagtcagtgactcatttcatttatcagggtcgggcaaatgatagtaatcga
gaatataaatctgcaaaagaaagaggggtgcatattgtttccgagcattggcttttagag
tgtgctcaagagtataagcatcttcctgaatctctttatccacacacttacaatcccaaa
atgagcctggacatcagtacagtacaagatggctggctctgtaatagccgggtaccctct
gcagttcctgcatctaaggacgatgagccagatcatttgtctgtagaagaaaatgagaca
aacagcatggtcatggataacaaagaatcaggactattgaatgggaatggaagaaatgac
tgcaaagggggatatggtgatgcaagtaaccttggcactctagagatggcagcagaagga
tcacaagtgggagctctgacacaggccttggagatgagagaaaacttccagaagcaattg
caagagatcatgtcagcaacctgcatcgtgaagatgcaggcgcagaggaattgcctgtca
agaagcagttgcaacagtgcctcttcaactcctgacagcgcacgctctgctcggagcgga
cgaagtcgagtcctggaggcactcaggcagtctcgacagatagtgcctgatatcaacaca
gagccctcccagaacgagcagatcatttgggatgatccgacagcaagggaggagagagca
aggctcgccagcaacttgcagtggcctagctaccctacacagttttctgaacttcaggtt
gatgttaaaaaactggatgattctccttctcaagagcctgtgtaccattcagaaattgct
gagcaggccttgtgtgtgactgaagccccagaacacccaatccctgaagaaccagaaact
ccagcaacagataagcatccagtccctgtgccacaagctcccagcattgctttccccttg
gccaagcctcccgtagctccacagactatggacaagatcgaaacagtggaggagagtcat
gaaaaacttaagcaatatgtgttccagatgtcgtctctgaattctcaagagcggattgat
tactgtcacctgattaaaaaacttggtgggtcagtgattgagaaacagtgctcagacccc
aactgcacacacatggttgtgggctatcccttgcgaaatgagaagtacttagcctccatg
gcagctggcaagtgggtacttcatcgctcctacctggaagcttgcaggacagctgggtgc
tttgtgcaggaagaagactatgaatggggaagtagctccatcctggatgctctcactgac
gtcactgagcaccaacaaaaactagcgcttgcagcaatgaggtggaggaaaagaatccag
caaagacaagagtcaggcattgttgagggagcatttagtggctggaaggttattttacgt
gttgatcggccccgagaagctgggtttaagcgtcttcttcaggcaggaggagcaaaggta
ttacctggtcatccagtacctttatttaatgaggctacacatcttttttgtgacttcaac
aaactgaaacctgatgactgcagagttttcatagcggaggctgctgcccagaacatggcc
tgcttgaaaacagaatatatcgctgattacctcatgctggaatcacctccttgtgcagat
aattaccgtctctcagaagctgcttttctcctgaataaagaatctgggccaggattatct
cagaagaggagagctcctgcagagaacatcatcaaacggcctcgagtgcactag
DBGET
integrated database retrieval system
