Phodopus roborovskii (desert hamster): 127237740
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Entry
127237740 CDS
T08852
Symbol
Arid1b
Name
(RefSeq) AT-rich interactive domain-containing protein 1B isoform X1
KO
K11653
AT-rich interactive domain-containing protein 1
Organism
prob
Phodopus roborovskii (desert hamster)
Pathway
prob03082
ATP-dependent chromatin remodeling
prob04714
Thermogenesis
prob05225
Hepatocellular carcinoma
Brite
KEGG Orthology (KO) [BR:
prob00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
127237740 (Arid1b)
09150 Organismal Systems
09159 Environmental adaptation
04714 Thermogenesis
127237740 (Arid1b)
09160 Human Diseases
09162 Cancer: specific types
05225 Hepatocellular carcinoma
127237740 (Arid1b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
prob03000
]
127237740 (Arid1b)
03021 Transcription machinery [BR:
prob03021
]
127237740 (Arid1b)
03036 Chromosome and associated proteins [BR:
prob03036
]
127237740 (Arid1b)
Transcription factors [BR:
prob03000
]
Eukaryotic type
Helix-turn-helix
ARID
127237740 (Arid1b)
Transcription machinery [BR:
prob03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
127237740 (Arid1b)
Chromosome and associated proteins [BR:
prob03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
127237740 (Arid1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
BAF250_C
ARID
Motif
Other DBs
NCBI-GeneID:
127237740
NCBI-ProteinID:
XP_051062083
LinkDB
All DBs
Position
Unknown
AA seq
2409 aa
AA seq
DB search
MAARAAAAAAAAAAARAPSGPRPAPGARDLQAGARGALAAAPGPILGGGDGGLNNVHHHP
LHPRHDLNMAHSASAAAAAASSSRAQSGGSEAALKEGASAATATALSSSSFSSTAAAAAA
SSSSSAGSGSAMETGLLPNHKLKAVGEAPAAPPHQQQQQHHHHAHHLHHAHHAHHLHHHH
HHHHQHALQQQLNQFQQPPQPQQQQPPPPPPPPQQQQQQHPTANNSLGGAGGGGGGAPQP
GPDMEQPQHGGAKDSAAGSHAEPQGQPLLSKPGDEDDAPPKMGEPAGSRYEHPGLGAQQP
PAPVAVPGGGGGGPAAVSEFNNYYGSAAPASGGPGGRAGPCFDQHGGQQSPGMGMMHSAS
AAAGAPGSMDPLQNSHEGYPNSQYNHYPGYSRPGAGGAGGGGGGGGGGGSGGGGGGGGGA
GGAGGAAAAAAGAGAVAAAAAAAAAAGGGGGGYGGSSSGYGVLSSPRQQGGGMMMGPGGG
GAASLSKAAAGAAAAAAAAAAAAGGFQRFAGQSPHPSGATPTLNQLLTSPSPMMRSYGGG
YPDYSSPSAPPPPPPPPSQPQSQAAAAVAAAGAAAGGQQAAAGMGLGKDLGAQYAAASPA
WAAAQQRSHPAMSPGTPGPAMGRSQGSPMDPMVMKRPQLYGMGTHPHSQPQQSSPYPGGS
YGPPGAQRYPLSMQGRAPGALGGMQYPQQQMPPQYGQQGVSGYCQQGQQPYYNQQPQPPH
LPPQAQYLQPQSQQRYQPQQDMSQEGYGTRSQPPLAPGKSNHEDLNLIQQERPSSLPVEV
LASEDAAFGLKDLSGSIDDLPTGTEATLSSAVSASGSTSSQGDQSNPAQSPFSPHASPHL
SSIPGGPSPSPVGSPVGSNQSRSGPISPASIPGSQMPPQPPGSQSESSSHPALSQSPMPQ
ERGFMAGTQRNPQMSQYGPQQAGPPMSPHPSPGGQMHPGISNFQQSNSSGTYGPQMSQYG
PQGNYSRTPAYSGVPSASYSGPGPGMGVNASNQMHGQGPTQPCGAMPLGRMASAGMQNRP
FPGNMSNVTPSSPGMSQQGGPGMGPPMPSVNRKAQEAAAAVMQAAANSAQSRQGSFPGVN
QSGLMASSSPYSQPMNNSSGLMNTQAQPYSMTPAMVNSSTASMGLADMMSPGESKLSVPL
KADGKEEGVPQPESKSKDSYSSQGISQPPTPGNLPVPSPMSPSSASISSFHGDESDSISS
PGWPKTPSSPKSSSSSTTGEKITKVYELGNEPERKLWVDRYLTFMEERGSPVSSLPAVGK
KPLDLFRLYVCVKEIGGLAQVNKNKKWRELATNLSVGTSSSAASSLKKQYIQYLFAFECK
IERGEEPPPEVFSTGDAKKQPKLQPPSPANSGSLQGPQTPQSTGSNSMTEVPSDLKPPTP
ASTPHGQMTPMQSGRSSTISVHDPFSDVGDSSYPKRNSMTPNTPYQQSMSMPDMMSRMPY
EPNKDPFSGMRKVPGSSEPFMTQGQMPNSGMQDMYNQSPSGAMSNLGMGQRQQFPYGASY
DRRHEAYGQQYPGQGPPTGQPPYGGHQPGLYPQQPNYKRHMDGMYGPPAKRHEGDMYNMQ
YGSQQQEVYNQYGSSYSGPDRRPVQGQYPYPYNRERMPGPGQMQPHGIPPQMMGGPMQPS
SSEGPQQNMWATRNDMPYPYQNRQGPGGPAQAPPYPGMNRTDDMMVPDQRINHESQWPPH
VSQRQPYMSSSASMQPITRPPQSSYQTPPSLPNHISRAPSPASFQRSLESRMSPSKSPFL
PALKMQKGMPTVPTSQVTGPPTQPPPIRREITFPPGSVEASQPVLKQRRKITSKDIVTPE
AWRVMMSLKSGLLAESTWALDTINILLYDDSTVATFNLSQLSGFLELLVEYFRRCLIDIF
GILMEYEVGDPSQKALDHHAGKKDDSQSSGEDSGKEEEDAECLDEEEEEEDSEKMESERK
SSAPPTAPDVTVDPKETPKQASKFDKLPIKIVRKNNLFVVDRSDKLGRVQEFNSGLLHWQ
LGGGDTTEHIQTHFESKMEIPPRRRPPPPLSSTGRKKELEGKGDSEEQPEKSIIATIDDV
LSARPGALPEDTNPGPQTDSSKFPFGIQQAKSHRNIRLLEDEPRSRDETPLCTIAHWQDS
LAKRCICVSNIVRSLSFVPGNDAEMSKHPGLVLILGKLILLHHEHPERKRAPQTYEKEEN
EDKGVACSKDEWWWDCLEVLRDNTLVTLANISGQLDLSAYTESICLPILDGLLHWMVCPS
AEAQDPFPTVGPNSVLSPQRLVLETLCKLSIQDNNVDLILATPPFSRQEKFYATLVRYVG
DRKNPVCREMSMALLSNLAQGDALAARAIAVQKGSIGNLISFLEDGVTMAQYQQNQQNLL
HMQPPPLEPPSVDMMCRAAKALLAMARVDENRSEFLLHEGRLLDISISAVLNSLVASVIC
DVLFQIGQL
NT seq
7230 nt
NT seq
+upstream
nt +downstream
nt
atggccgcgagggcggcagcagcagcggcggcggcggcggcggcgcgggcgccctcgggg
ccgcggccggcgcccggggcccgggacctgcaggcgggcgcgcgcggcgcgctggcggcg
gctccgggccccatactggggggcggcgacggcggcctgaataatgtgcaccaccacccc
ctgcacccccgtcacgacctgaacatggcccatagcgcgagcgccgcggccgccgccgcc
agctccagccgcgcgcagagcggcggctccgaggcggctctcaaggagggtgccagcgcc
gccaccgccaccgcgctgtcctcctcctccttctcctccaccgccgccgccgccgcggcc
tcttcctcctcctcggcgggctccggctcggccatggagaccgggctgctccccaaccac
aaactgaaagccgttggcgaggcccccgctgcaccgccccaccagcagcagcagcagcac
caccaccatgcccaccacctccaccatgcccaccatgcccaccacctccaccaccaccac
caccaccaccaccagcacgcactccagcagcagctaaaccagttccagcagccgccgcag
ccacagcagcagcagccgccgccgccgccgccgccgccgcagcagcagcagcagcagcat
cccactgccaacaacagcctgggcggcgcgggcggcggcggcggcggcgcgcctcagccc
ggcccggacatggagcagccgcaacatggaggcgccaaggacagcgccgcgggcagtcat
gccgagccgcagggccagcctctgctgagcaagccgggcgacgaggacgacgcgccgccc
aagatgggggagccggcgggcagccgctatgagcacccgggcctgggcgcgcagcagcca
cccgcgccggtcgccgtgcccgggggcggcggcggcggcccggcggccgtctcggagttt
aataattactatggcagcgctgcccctgctagcggcggccccggcggccgcgctgggcct
tgctttgatcaacatggcggacaacaaagccccgggatggggatgatgcactccgcctct
gccgccgccggggcccccggcagcatggaccccctgcagaactcccacgaagggtacccc
aacagccagtacaaccattatccgggctacagccggcccggcgcgggcggcgcgggcggc
ggcggcggcggcggaggaggaggaggcagcggaggaggtggaggaggaggaggaggagca
ggaggagcaggaggagcagcggcagcggcagcaggagccggagctgtggcggcggcggcg
gcggccgcggcggcggcgggaggcggcggcggcggctatgggggctcgtcctcggggtac
ggggtgctgagctccccgcggcagcagggcggcggcatgatgatgggccccgggggcggc
ggggccgcgagcctcagcaaggcggccgccggcgcggcggcggcggcggcagcggcggcg
gcggcggcggggggcttccagcgcttcgccggccagagcccgcacccgtcgggggccacg
ccgaccctcaaccagctgctcacatcgcccagccccatgatgcggagctacggcggcggc
taccccgactacagcagccccagcgcgccgccgccgccgccaccgccgccgtcgcagccc
cagtcccaggcggcggcggcggtggcggcggcgggggcggcggcgggtggccagcaggcg
gccgcgggcatgggcttaggcaaggacctgggcgcccagtacgccgctgccagcccggcc
tgggcggccgcgcaacaaaggagtcacccggcgatgagccccggcacccccggaccggcc
atgggcagatcccagggtagtccaatggatccgatggtgatgaagaggcctcagttgtac
gggatgggcactcacccccactcccagccacagcagagcagtccgtacccaggaggctcc
tacggccccccaggcgcacagcgataccccctcagcatgcagggccgagctccgggggcc
ctgggaggcatgcagtacccacagcagcaaatgccgccacagtacggacagcaaggtgtg
agtggttactgccagcaaggccagcagccatattacaaccagcagccgcagcccccgcac
ctcccgccccaggcccagtacctgcagccccaatcccagcagaggtaccagccacagcag
gacatgtctcaggaaggctatggaactagatctcagcctcctctggccccaggaaaatcc
aaccacgaagacttgaatttaattcaacaggaacggccgtcgagtttaccagttgaagtc
ttggcctcggaggatgcagcctttggactcaaggacctgtctggctccatcgatgacctc
cccacaggaacggaagcaactctgagctcagcagtcagtgcatccggctctacgagcagc
cagggggatcagagcaaccctgctcagtctcctttctccccacacgcatcaccccatctc
tccagcatccctggggggccgtcaccttctcccgttggctctcctgtgggaagcaaccaa
tcacggtctggcccgatttcccctgcaagtattccaggcagccagatgcctccccaacca
ccagggagccagtcagaatccagttcccatcctgccttgagccaatcaccaatgccacag
gaaagaggctttatggcaggcacacagagaaaccctcagatgtctcagtacggacctcag
caggcaggaccgcccatgtcaccccacccttctcctggaggccagatgcaccctggaatc
agtaactttcagcagagcaactcaagtggcacttacggtccacaaatgagccagtatgga
ccccaaggcaactactccagaaccccggcatatagcggggtgcccagtgcaagctacagc
ggcccagggcccggtatgggtgtcaatgccagcaaccagatgcatgggcaagggccaacc
cagccgtgtggtgctatgcccctaggacggatggcttcagctgggatgcagaacagaccg
tttcctggaaacatgagcaacgtcacccccagttctcctggcatgtctcagcagggaggg
ccgggaatgggcccgccaatgccctctgtgaaccgtaaggcccaggaagccgctgcagct
gtgatgcaggctgctgcaaactcagcccaaagcaggcaaggcagttttcctggcgtgaac
cagagtggactcatggcctccagctctccctacagccaacccatgaacaacagctccggc
ctgatgaacacacaggcacagccctacagcatgacacctgcaatggtgaacagctccaca
gcgtctatgggtcttgcagatatgatgtctcctggcgaatccaagctgtccgtgcctctt
aaggcagacgggaaagaagaaggtgtgccccagcccgagagcaagtcaaaggatagctac
agctctcagggtatttctcagcctccgaccccaggcaacctgccagtcccttccccgatg
tcccccagctctgccagcatctcttcctttcacggagatgagagcgatagcattagcagc
ccaggctggcccaagactccatccagccctaagtccagctcatcttccaccacgggagag
aagatcacaaaagtgtatgagctggggaatgagccggagaggaagctgtgggttgaccgc
tacctgacgttcatggaagagaggggctcccccgtgtccagtcttccggcagtgggcaag
aagcccctggacctgtttcgactctatgtctgcgtcaaagagattggcggtttggcccag
gttaataaaaacaagaagtggcgagagctggcaaccaacctgagcgttggcacttccagc
agcgcggctagctccctcaaaaagcagtacattcagtacctgttcgcctttgagtgcaaa
atcgagcgaggggaggagcccccgccagaagtcttcagcactggggatgcgaagaaacag
cccaagctccagccgccatctcctgctaactcaggatccttacaaggcccacagactcca
cagtcaacaggcagcaactcaatgactgaagttcccagtgacctgaagccaccgacccca
gcatctacccctcacggacagatgacccccatgcaaagtggaagaagcagtacaatcagt
gtgcatgacccattctcagatgtgggcgattcgtcatacccaaaacggaactccatgact
ccaaataccccgtaccagcagagcatgagcatgccagacatgatgagcaggatgccctat
gagcccaacaaggaccccttcagtggaatgagaaaagtgcctggaagtagcgagcccttt
atgacacaagggcagatgcccaacagcggcatgcaggacatgtacaaccagagtccttcg
ggcgccatgtccaacctgggcatggggcagaggcagcagttcccctatggagccagttac
gaccgaaggcatgaggcttatgggcagcagtatccaggccaaggtcctcccacaggacag
ccaccgtatggaggacaccagcctggcctgtacccacagcagccgaattacaaacgccat
atggatggcatgtatgggcctccagccaagcgccatgagggggacatgtacaacatgcag
tatggcagccaacagcaggaggtgtacaaccagtatggcagctcctactctggcccagac
aggaggcccgtccagggacagtatccctacccctacaacagagagaggatgccgggcccc
ggccagatgcagccacatggaatcccacctcaaatgatggggggccccatgcagccatcc
tccagcgaggggcctcagcagaatatgtgggcgacacgcaatgacatgccttatccctac
cagaacaggcaaggcccgggaggccctgcccaggcgccaccttacccaggcatgaaccgt
acagatgacatgatggtaccagaccagaggatcaaccatgagagccagtggcctcctcac
gtcagccagcgccagccttacatgtcgtcctcggcctccatgcagcccatcacgcgccca
cctcagtcatcctaccagacgccaccatcactgccaaaccacatctccagggcgcccagc
cccgcctccttccagcgctccctggagagtcgcatgtctccaagcaagtctcccttcctg
cccgccctgaagatgcagaaaggcatgcccacggtccccacatcccaggtcactgggcca
cccactcagccaccgccaatcagaagggagattacctttcctcctgggtccgtagaagcc
tcacagccagttctgaaacagaggcgaaagatcacctcaaaagacattgttactcctgag
gcgtggcgtgtgatgatgtcccttaaatctggtctgttggctgagagcacttgggctctg
gacaccatcaacattctcctctacgacgacagtactgttgccaccttcaatctttcccag
ctgtctgggttcctggagcttttagtcgagtactttcgaagatgcctaattgatattttt
ggaatccttatggaatatgaagtaggtgaccccagccaaaaagcacttgatcaccatgcg
ggaaagaaagacgacagccagtcctcaggagaggattctgggaaagaagaagaagatgct
gagtgtcttgatgaagaggaggaggaggaagacagcgaaaagatggagtcagagaggaag
agcagtgcgccccctacagctcccgatgtcacggtggaccccaaggagacgccaaagcag
gccagtaagtttgacaagctgcccataaagattgtcagaaagaacaacctgtttgtggtg
gaccggtctgacaagctgggccgcgtgcaggagttcaacagtggactcctgcactggcag
ctggggggcggcgacactacagagcacatccagactcactttgagagcaagatggagatc
cctcctcgcaggcgcccgcctccgcccctgagctccacaggaaggaagaaagagctagaa
ggcaaaggtgattctgaagagcagccagagaaaagcatcatagccaccatcgatgacgtc
ctctctgcccggccgggggccctgcccgaagacaccaacccaggaccccaaaccgatagc
agcaagtttccctttggaatccagcaggccaaaagccaccggaacatcaggctcctggag
gacgagcccaggagccgagacgagacacccctgtgcaccatcgcgcactggcaggactca
ctggccaagcgctgcatctgtgtgtccaacatcgtgcggagcttgtctttcgtgcctggc
aacgacgcagagatgtccaaacacccaggcttggtgctgatcctgggaaagctgattctg
ctgcatcacgagcatccggagagaaagcgggcgccacaaacctatgagaaggaggagaat
gaggacaagggggtggcctgcagcaaagatgagtggtggtgggattgccttgaggtcttg
cgggataacacattggtcacgctggccaatatttccgggcagctagacttgtctgcgtac
acggagagcatctgcttgccgatcctagacggcttgctgcactggatggtgtgcccctcc
gcggaggcgcaggaccccttccccacggtggggcctaactcagtcctgtcaccacagaga
cttgtgctggaaaccctctgtaaactcagtatccaggacaacaacgtggacctcatcttg
gccacacctccatttagtcgtcaggagaaattttatgctacattagttaggtacgttggg
gatcgcaaaaacccagtctgtcgagaaatgtccatggcgcttttatcgaacctcgcccag
ggggacgcactggcagcaagggcaatagctgtgcagaaaggaagcatcggaaacttgata
agcttcctcgaggacggggtcacaatggctcagtaccagcagaaccagcagaacctctta
cacatgcagcccccgcctctggaaccccctagtgtagacatgatgtgcagggcggccaag
gctttgctggccatggccagagtggatgagaaccgctcagagttccttttgcacgagggc
cggttgctggatatctcgatatcggctgtcctgaactctctggtggcatctgtcatctgt
gatgtactgtttcagatcgggcagttatga
DBGET
integrated database retrieval system
