Phodopus roborovskii (desert hamster): 127237844
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Entry
127237844 CDS
T08852
Symbol
Rtcb
Name
(RefSeq) RNA-splicing ligase RtcB homolog
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
prob
Phodopus roborovskii (desert hamster)
Brite
KEGG Orthology (KO) [BR:
prob00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
prob03016
]
127237844 (Rtcb)
Enzymes [BR:
prob01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
127237844 (Rtcb)
Transfer RNA biogenesis [BR:
prob03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
127237844 (Rtcb)
Prokaryotic type
tRNA splicing ligases
127237844 (Rtcb)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RtcB
Cu-oxidase_4
Motif
Other DBs
NCBI-GeneID:
127237844
NCBI-ProteinID:
XP_051062198
UniProt:
A0AAV0A7Y2
LinkDB
All DBs
Position
Unknown
AA seq
505 aa
AA seq
DB search
MSRSYNDELQFLDKINKNCWRIKKGFVPNMQVEGVFYVNDALEKLMFEELRNACRGGGVG
GFLPAMKQIGNVAALPGIVHRSIGLPDVHSGYGFAIGNMAAFDMNDPEAVVSPGGVGFDI
NCGVRLLRTNLDESDVQPVKEQLAQAMFDHIPVGVGSKGVIPMNAKDLEEALEMGVDWSL
REGYAWAEDKEHCEEYGRMLQADPNKVSPRAKKRGLPQLGTLGAGNHYAEIQVVDEIFNE
YAAKKMGIDHKGQVCVMIHSGSRGLGHQVATDALVAMEKAMKRDKIIVNDRQLACARIAS
PEGQDYLKGMAAAGNYAWVNRSSMTFLTRQAFAKVFNTTPDDLDLHVIYDVSHNIAKVEQ
HVVDGKERTLLVHRKGSTRAFPPHHPLIAVDYQLTGQPVLIGGTMGTCSYVLTGTEQGMT
ETFGTTCHGAGRALSRAKSRRNLDFQDVLDKLADMGIAIRVASPKLVMEEAPESYKNVTD
VVNTCHDAGISKKAIKLRPIAVIKG
NT seq
1518 nt
NT seq
+upstream
nt +downstream
nt
atgagtcgcagctacaacgatgagctgcagttcttggacaagatcaacaagaactgctgg
aggatcaagaagggctttgtgcccaacatgcaggtggaaggtgtgttttatgtgaatgac
gcgctggaaaaattaatgttcgaggaattaaggaatgcctgtcgaggtggtggtgttggt
ggcttcctgccagccatgaagcagattggcaatgtggctgccctgcccgggattgttcat
cgctctattgggcttcctgatgtccactcgggctatgggtttgccatagggaacatggct
gcctttgatatgaatgaccccgaagcagtggtatctccaggtggtgtcgggtttgacatt
aactgcggtgtccgcttgctaagaaccaatttagatgagagcgatgtgcagccagtgaag
gaacagcttgctcaagctatgtttgaccacattcccgttggggtgggatccaaaggtgtc
atcccaatgaatgccaaagacttggaggaggcattggagatgggtgtggactggtctctg
agagaaggctatgcctgggctgaagacaaggagcactgtgaggagtatggaaggatgctg
caagctgaccccaataaggtctcacccagggcaaaaaaaaggggccttcctcagttgggg
accctgggagcaggcaatcactatgcagaaatccaagttgtagatgagattttcaatgag
tatgctgctaaaaaaatgggcatcgaccataagggacaggtgtgtgtgatgatccacagt
ggaagcagaggcttgggccaccaagttgcaacagatgcactggtagctatggaaaaggcc
atgaagagagacaagattattgtcaatgaccgacagttggcttgtgctcggattgcatcc
ccagaggggcaagactatttgaagggaatggctgcagctggaaactatgcctgggttaac
cgttcttctatgaccttcttaacccgtcaggcttttgccaaagtcttcaacacaacccct
gatgacctggacctgcatgtgatttatgatgtttctcacaatatcgccaaagtggagcag
cacgtggtagatggaaaggagcggacactgttggtgcacaggaagggatccacccgtgct
ttccctcctcaccacccgcttattgctgttgattaccaactcactggacaaccagtgctt
attggtggcaccatgggaacctgtagttatgttctgactggcactgaacaaggcatgacg
gagaccttcggaacaacctgtcatggagcgggtcgtgcattgtcccgagcaaaatctcgc
cgtaatttagatttccaagatgtcttagacaaactggcagatatgggaattgcaatccgt
gttgcctcacccaagctggttatggaagaggctccagagtcctataagaatgtaacagac
gtcgtgaatacctgccatgatgctgggatcagcaagaaggccattaaactgagaccaatc
gctgttattaaaggatag
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