Phodopus roborovskii (desert hamster): 127238772
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Entry
127238772 CDS
T08852
Symbol
Cic
Name
(RefSeq) protein capicua homolog isoform X1
KO
K20225
capicua transcriptional repressor
Organism
prob
Phodopus roborovskii (desert hamster)
Pathway
prob05017
Spinocerebellar ataxia
Brite
KEGG Orthology (KO) [BR:
prob00001
]
09160 Human Diseases
09164 Neurodegenerative disease
05017 Spinocerebellar ataxia
127238772 (Cic)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
prob03000
]
127238772 (Cic)
Transcription factors [BR:
prob03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
127238772 (Cic)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DUF4819
HMG_box
HMG_box_2
Zf_WRKY19
Motif
Other DBs
NCBI-GeneID:
127238772
NCBI-ProteinID:
XP_051063434
LinkDB
All DBs
Position
Unknown
AA seq
2542 aa
AA seq
DB search
MSGSVLVGPGWGRKVHVWAGLVPDLRLQNGALAGGQTMKPMKKVCPGLAGSASGSKSPPA
TRAKALRRRGAGEGDKPEEDDEEAQTQEQTGPEEAEEGEEEEAERDPGTEGPPPELQPND
PTPGLAEDPKGDGEAGRWEPSLSRKTATFKSRAPKKKYVEELGAGSSGVGGAPEERERAP
EDASALGVPPRPPASARSSSTDTASEHSADLEDEPAEACGPGPWPSGSIIAGYDLRQLRS
QRVLARRGDGLFLPAVVRQVRRSQDLGVQFPGDRALTFYEGVSGGSVDVVLDATPPAGAL
MVGTAVCTCVEPSMAAYREGVVVEVTTKPAAYKVRLGPGPAGPLPQAQQPLHREPEEAVW
VTRSSLRLLRPPWEPEALLRKHSAGLEEEQAEPGVTLPPCPSSLEPKQPEDAEVSNISFG
SNLGTHCEEGEEKHPPALGTPALLPLPPPQLLSPPPKSPAFAGPGRPGEQPSPCQEGSQG
GSRSSSVASLEKGAAPAARARTPLTAAQQKYKKGDVVCTPNGIRKKFNGKQWRRLCSRDG
CMKESQRRGYCSRHLSMRTKEMEGLADGGPGGTGRPAGVAAREGSTEFDWGDETSRDSEA
SSVAARGDSRPRLVAPADLSRFEFDECEAAVMLVSLGSSRSGTPSFSPVSTQSPFSPAPS
PSPSPLFGFRPANFSPINASPVIQRTAVRSRHLSASTPKAGVLTPPDLGPHPPPPAPRER
HSSGILPTFQTNLTFTVPISPGRRKTELLPHPGTLGASGAGGGGAAPDFPKSDSLDSGVD
SVSHTPTPSTPAGFRAVSPAVPFSRSRQPSPLLLLPPPAGLTSDPGPSVRRVPAVQRDSP
VIVRNPDVPLPSKFPGEVGTAGEARAGGPGRGCRETPVAPGVPSGKPGLPPPLPAPVPIT
VPPAAPTAVAQPMPTLGLASSPFQPVAFHPSPAALLPVLVPSSYPSHPAPKKEVIMGRPG
TVWTNVEPRSVAVFPWHSLVPFLAPSQPDPSVQPSEAQQPASHPVASNQSKEPAESAAVA
HEQPPGRAGSADPGRPPGATGPESPGPGPPLTVGGVDPGKSLPPTTEEEAPGPPGEPRLD
SETESDHDDAFLSIMSPEMQLPLPPGKRRTQSLSALPKERDSSSEKDGRSPNKREKDHIR
RPMNAFMIFSKRHRALVHQRHPNQDNRTVSKILGEWWYALGPKEKQKYHDLAFQVKEAHF
KAHPDWKWCNKDRKKSSSEAKPASLGLAGGHKEPRERSMSETGTAAAPGVSPELLSVAAQ
TLLSSDTKAPGSGPCGAERLHTVGGPGSARPRAFSHSGVHSLDGGGVDSQALQELTQMVS
GPASFSGPKPSPQYGAAGSFAAPGEGGTLATSGRPPLLPSRASRSQRAASEDMTSDEERM
VICEEEGDDDVIADDSFGTTDIDLKCKERVSDSESGDSSGEDPEGNKGFGRKGFSPVIRS
SFAHCRPTLDPEPPGPPDPPAAFSKGYGPAPPASAPASTSVSASFSLGSGTFKTQESGQA
STAVPLRPPPPGAGGPATPSKATRFLPTDPSTFRRKRPESVGSLEAPGPSVIAAPPSAGG
NILQTLVLPPSKEEREGGGTRVPSAPAPSLAYGAPAAPLSRPAATMVTNVVRPVSSTPVP
IASKPFPTSGRAEASSNDTVGARTEMGTGSRVPGGSPLGVSLVYSDKKSAAATPPAPHLV
AGPLLGTVGKAPATVTNLLVGTPGYGAPASSAVQFIAQGAPGSAAPAGSGASAGSGPNGP
VPLGILQPGALGKAGGITQVQYILPTLPQQLQVAPAPAPAPGTKAAAPSGPAPTTSIRFT
LPPGTSTNGKVLAATAPTAGIPVLQSVPSAPPPKAQSVSPVQATPSGGSAQLLPGKVLVP
LAAPSMPVRGGGAGQPLPLVSSPFSVPVQNGAQQPSKIIQLTPVPVSTPSGLVPPLSPAP
MPGPTSQPQKVLLPSSTRITYVQSAGGHTLPLGTSPACSQAGTVTSYGPASSVALGFTSL
GPSGPAFVQPLLSAGQAPLLAPGQVGVSPVPSSQLPPACTAPGGPVITAFYPGSPAPTSA
PLGPPSQAPPSLVYTVATSTTPPAATILPKGPPASATATPVPTSPFPSATAGSMTYSLVA
PKAQRPSPKAPQKVKAAIASIPVGSFESGATGRPGPTPRQSLESGAAREPAAPESELEGQ
PTPPVPPPPPETWPPAARSSPPPPLPAEERPGTKGPETASKFPSSSSDWRVPGLGLESRG
EPPAPPSPAPAAVTVPAGGGSEGSSGRAAGDTPERKEVTSSGKKVKVRPPPLKKTFDSVD
NRVLSEVDFEERFAELPEFRPEEVLPSPTLQSLATSPRAILGSYRKKRKNSTDLDSAPED
PTSPKRKMRRRSSCSSEPNTPKSAKCEGDIFTFDRTGTETEDVLGELEYEKVPYSSLRRT
LDQRRALVMQLFQDHGFFPSAQATAAFQARYADIFPSKVCLQLKIREVRQKIMQAATPTE
QPPGAEAPLPGPPPTGMAATPVPTPSPAGGPDPTSPGSDSGTAQTAPPLPPPPEPGPGQP
GWEGAPQPSPPPSGPSTAAAGR
NT seq
7629 nt
NT seq
+upstream
nt +downstream
nt
atgtcgggtagtgtgcttgtaggccctgggtggggtagaaaggttcatgtttgggcaggg
ttggtaccagatctcaggctccagaatggtgccctagcaggtggacagacgatgaagcca
atgaagaaagtatgccctggccttgcaggttctgccagcggcagcaagtccccaccagct
accagggccaaggctttgagacggcgaggggccggggagggtgacaagccagaggaggac
gatgaggaagcccagacacaggagcagacagggccagaagaggcagaagaaggcgaggaa
gaggaggctgagcgggatcctggcactgaggggccacctccggagctgcagcccaatgac
cctactccaggcctagctgaggaccccaagggagatggggaggcaggccgctgggagcct
tcactcagtcgcaagacagctacatttaagtctcgagccccaaagaagaagtatgtggag
gaactcggtgctggaagcagtggggtgggcggagcccccgaagagcgagagcgggcccct
gaggatgctagtgccctgggtgtacctccacggccacccgcctccgcccggtcctcctct
accgacacagccagtgagcactccgctgacctggaggatgagccggccgaggcttgtggt
cccggcccctggccctctggcagcattattgctggctacgaccttcggcaactaaggtct
cagcgggtgctggctcgtcgtggtgatggcctcttcctgcccgctgttgtgcgccaggtg
cgcaggagccaggacctgggtgtccagttccctggggaccgggccttgactttctatgaa
ggggtgtcaggtggcagtgtggatgtagttttggatgccacgccacctgcaggtgccctg
atggtgggcacagctgtctgtacctgtgtggaacccagtatggctgcctaccgagagggt
gtggtggtggaagtgaccaccaaaccagctgcctataaggttcgcctcggccctggccca
gcaggccctctgccacaagcccagcagccgctgcaccgtgagcccgaggaggctgtgtgg
gtcacccgctctagcctgcgcttgctccggcccccctgggaacctgaggccttgctgagg
aagcactctgcaggcctagaggaagagcaggctgagcctggggtcactctgcctccttgc
ccttcttccctggagcccaagcagccagaggacgccgaggtctccaacatcagcttcggt
agcaacctggggactcactgtgaggagggtgaggagaagcacccgccagccctgggcacc
ccagccctgctgccgctgcccccaccccagctcctgtcaccacccccgaaatccccagcc
tttgctggccctggtcgccctggcgagcagccttcgccctgccaggaaggaagccagggt
ggcagccggagcagcagtgtggcctcgctggagaagggagctgcaccggcagcccgtgcc
cgcacgccattgacagcggcccagcagaagtacaagaagggtgatgtggtctgcacgccc
aatggcatccggaagaagttcaacggcaagcaatggcgccgcctctgctcccgggatggc
tgcatgaaggagtcccaacggcggggctactgctcccgccacctgtccatgagaaccaaa
gagatggagggcctggcagacggggggccgggtgggaccgggcggcctgctggtgtggca
gcccgcgagggaagcacggagtttgactggggtgatgagacctcgagggacagtgaagcc
agcagcgtggcagcccgcggagactcccgcccacgcctggtggcgccggccgacctgtcc
cgctttgaatttgatgagtgtgaggcggctgtgatgctggtgtctctgggcagctcgcgg
tcaggcacgccttccttctctccggtctctacacagtcgcccttctcgccggctccatca
ccctcaccctcgcccctcttcggctttcgccctgccaacttcagccccataaacgcctca
ccggtcatccaacgcacggctgtgcgcagccgccacctgagcgccagcacccctaaggca
ggtgtgctgacaccaccagacctgggcccccatccaccgccgcctgccccccgagagcgc
cattcctctggcatcctacccaccttccagaccaacctaaccttcactgtgcccattagc
cctggtcgaaggaagacagaactgttaccacacccggggacactgggcgcctccggggca
ggaggtggaggagccgccccggacttccccaagagtgacagcttagactctggagtggac
tcggtgtcccacacacctaccccttccacgccagctggcttccgggctgtgtcacctgcc
gtgcccttctctcgctcccgccagccttcgccattgctgctgttgcccccacctgctgga
ctcacctcagacccagggccctctgtgcgaagggtgcctgctgtgcagagggactcacct
gtcattgtccgcaaccctgatgtgccactgccctccaaattccctggagaggtgggcact
gccggggaggcgcgggccgggggacctgggcggggttgccgggagacgccggtggcccct
ggggtgcccagcgggaagcctggcctgcccccacctctgcctgccccagtgcccatcact
gtgcctccagccgcaccgactgctgtggcccagccgatgcccaccttgggcctggcctct
tcacccttccagcccgtggcctttcacccttcacctgctgccctgttgccagtcctagtg
cccagcagctatcccagccaccctgcccctaagaaggaagtcatcatgggcaggcctgga
acagtgtggacaaatgtggaacctcgttctgtggccgtgttcccctggcactccttagtc
cccttcttggcacccagccagccggacccctctgtgcagcctagtgaggcccagcaacct
gccagccaccctgtggcctccaaccagagcaaagaacctgctgaatcagctgctgttgct
catgagcaaccaccaggaagggcggggagcgctgaccctgggcggccgcctggagccaca
ggccctgagagcccagggcctggacctccactcactgtggggggtgtggaccctggtaaa
agtcttcctcccaccactgaggaggaggcccctgggcccccaggagagccccggctggac
agtgagacagagagcgatcatgatgatgccttcctctccatcatgtctcctgagatgcag
ctgcctctgccacctggaaagcgccggacccagtccctgagtgccctgcccaaggagcga
gactcatcttctgagaaggatggacgaagtcctaacaagcgggagaaggaccatatccgt
cggcccatgaatgccttcatgatcttcagcaagcggcaccgggccttggtccaccagcgg
caccccaaccaggataaccggactgtcagcaagatcctgggagagtggtggtatgctctg
ggacccaaggagaagcagaaataccacgatctggccttccaggtgaaagaggcccacttc
aaggcccacccagattggaagtggtgcaacaaggaccgaaagaagtccagctcagaggcc
aagcccgcgagcctggggctggcaggagggcacaaggagccgcgggaacggagcatgtcg
gagacgggaaccgctgctgcccccggggtgtctcctgagctcctgtccgtggcagcccag
acactcctgagctcggacaccaaggccccagggagtggcccctgtggagcagagcgactg
cacacggtcgggggacctggctcagccagacccagagccttctctcacagtggggtgcac
agtcttgatggtgggggagtagacagccaagcactacaagaactgacccagatggtctcc
ggccctgcgtccttctccggccccaagccttccccccagtatggcgctgcagggtctttt
gcagctcctggtgagggaggtaccttggccactagtgggcggcccccactgctgccctcc
cgagcctctcgttcccagcgtgcggccagtgaggacatgaccagtgacgaggagcgcatg
gtcatctgtgaggaagaaggtgacgatgatgtcatcgctgatgacagttttggcaccact
gacattgacctcaagtgtaaggagcgagtgagtgacagtgagagtggggacagctccggg
gaggacccagagggcaacaagggctttggccgtaaggggttctcacctgtcatccgctcc
tcttttgcccattgccgtccaaccctggaccctgagcctccggggcccccggatccacct
gcagccttcagcaaaggctacggccccgccccgccagcctcggcacctgcttccacctca
gtctcagcctccttttcgctgggctccggaacatttaagacccaggagtctggccaggcc
agcacggcggtcccactgcggcccccacctcctggagccgggggcccggcaacaccttcc
aaagccactcggtttcttcctacggatccctccaccttccggcgcaagagacccgaaagt
gttggcagcctggaggcgcccggcccctcggtcattgcggcacctcccagcgcaggaggg
aacattctgcagacgctggttctgcctccaagcaaggaggagcgggagggcggtggtact
cgggtgccctcagcccccgcaccgtcactggcttatggggctccagcagcccccctgtcc
cgccctgctgccaccatggtcaccaatgtggtacgacctgtgagcagcactcctgtgccc
attgcctccaagccatttcccacctctggccgggctgaggcatcttcaaatgacacagta
ggtgccaggactgaaatgggcactgggtctcgggtgcctgggggctccccattgggtgtc
agcttagtgtattcagataagaagtcagcagcagccaccccaccagctccacacttggta
gctgggcccctgttgggcaccgtggggaaggcacctgctactgtcaccaacctgttggtg
ggcacgccgggctacggggcccctgcatcatcggctgtgcagtttattgcccagggagcc
ccaggcagtgcggcccctgcaggctcaggagcaagtgctgggagtggccccaacgggcca
gtgcccctgggcatcctgcagccgggtgccctaggcaaggctgggggaatcacccaggtg
cagtacatcctgcccacactgccccagcagcttcaagtggcacctgccccagcgccagcc
cctgggaccaaggcagcagctcctagtggccctgcacccaccaccagcatccgcttcacc
ctccctcctggcacctcgaccaacggcaaggtcctggctgctaccgcgcccactgctggc
atccctgtcctgcagtctgtaccttctgccccgccccctaaagcccagtcagtttctcct
gtccaggccacaccttctgggggctcagcgcagctgcttcctgggaaggtgctagttccc
ctggctgcccccagcatgccagttcgaggtggaggggctggccagccactgcccctggtt
agctcgcctttctcagtacctgtccaaaatggtgcccagcaacctagcaagattatccag
ctgactcctgtgcctgtgagcacacctagtggtctggtgccacccctgagcccagcccca
atgccgggacccacgtcacagcctcagaaggtcctgttaccctcttccacaagaatcact
tatgtgcagtcagcaggcgggcacactctgcctctgggtaccagtcctgcgtgcagtcag
gctgggacggtgacctcatacgggcccgccagctctgtagctctgggcttcacgtcgttg
gggcccagtggccctgccttcgtacagcccctgctctcagcaggccaagctccgttgctg
gctcctggccaggtgggagtgtcacctgtgcctagttcccagttgcctcctgcctgcaca
gcccctggaggtcctgtcataacagcattttaccctggcagccccgcacccacctcagca
cccctgggcccaccttcccaagctcctccaagcctggtctacactgtggccaccagcacc
accccgcctgctgccaccattctgcccaagggcccaccagcctctgccactgccactcca
gtccccactagtcctttccctagtgccacagcaggctccatgacctacagcttagtggct
cccaaggctcagcggcccagtccaaaggccccccagaaggtgaaggcagccatcgccagc
attcccgtggggtcttttgagtcgggtgccactgggcggcctggacctacaccccgacag
tctctggaatctggtgcggcccgagagccagctgccccagaatcagagcttgaggggcag
cccacacccccagtgcccccgcccccaccagagacctggcctcctgctgcccggagcagc
cccccacctcccctgcctgctgaggagcgacctggcaccaaaggccccgagaccgccagc
aaattccccagctcatcttcagactggcgagtccctgggctgggcctggagagccgtggg
gagcctcctgctcctcccagcccagcgcctgctgcagtcacagtgcccgctggcggcggc
agcgagggcagtagtggcagagcagctggggacacacccgagcgcaaagaagtgactagt
tctgggaagaaggtgaaggtgcggcccccacccctgaagaagacctttgactctgtggac
aacagggtcctgtcagaagtggactttgaagagcggtttgctgagctacccgagtttcgg
ccggaggaggtgctgccctcacccaccctgcagtctctggccacctcgcctcgggccatc
ctcggctcctaccgcaagaagaggaagaattccactgacctggactcggcgcctgaggac
cccacctcacccaagcgcaagatgaggagacgttcaagctgcagctcggaacccaacacc
ccgaagagtgccaagtgcgagggtgacatcttcacctttgatcgaacaggcactgaaact
gaggatgtgctgggggagctggagtatgagaaagtcccctactcgtcactgcggcgcacc
ctggaccaacgccgggccctggtcatgcagctcttccaggaccatggctttttcccatca
gcccaggccacagcagccttccaagcccgctacgcagacatcttcccgtccaaggtgtgt
ctgcagttgaagatccgggaggttcgacagaagatcatgcaggcagccactcccacagag
cagcccccaggggctgaggcccccctccccggaccaccccccactggcatggctgctact
cctgtccccactcccagccctgctgggggccctgaccccacctctccaggctcggactct
ggcactgcccaaactgcccccccactgcctccacccccagagcctgggcctggacagcct
ggctgggagggggctccccagccctccccacctccctctggcccctccacagctgccgca
ggcaggtga
DBGET
integrated database retrieval system
