Phodopus roborovskii (desert hamster): 127238871
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Entry
127238871 CDS
T08852
Symbol
Lig1
Name
(RefSeq) DNA ligase 1 isoform X1
KO
K10747
DNA ligase 1 [EC:
6.5.1.1
6.5.1.6
6.5.1.7
]
Organism
prob
Phodopus roborovskii (desert hamster)
Pathway
prob03030
DNA replication
prob03410
Base excision repair
prob03420
Nucleotide excision repair
prob03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
prob00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
127238871 (Lig1)
03410 Base excision repair
127238871 (Lig1)
03420 Nucleotide excision repair
127238871 (Lig1)
03430 Mismatch repair
127238871 (Lig1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
prob03032
]
127238871 (Lig1)
03400 DNA repair and recombination proteins [BR:
prob03400
]
127238871 (Lig1)
Enzymes [BR:
prob01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
127238871 (Lig1)
6.5.1.6 DNA ligase (ATP or NAD+)
127238871 (Lig1)
6.5.1.7 DNA ligase (ATP, ADP or GTP)
127238871 (Lig1)
DNA replication proteins [BR:
prob03032
]
Eukaryotic type
DNA Replication Elongation Factors
Other elongation factors
127238871 (Lig1)
Prokaryotic type
Elongation factors (archaeal)
Other elongation factors
127238871 (Lig1)
DNA repair and recombination proteins [BR:
prob03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
127238871 (Lig1)
NER (nucleotide excision repair)
Other NER factors
127238871 (Lig1)
MMR (mismatch excision repair)
Other MMR factors
127238871 (Lig1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_A_C
DDR
PucR
DUF2397
Motif
Other DBs
NCBI-GeneID:
127238871
NCBI-ProteinID:
XP_051063591
LinkDB
All DBs
Position
Unknown
AA seq
934 aa
AA seq
DB search
MRKKEQERKGENSATTMQRSIMSFFQPTKEGKAKKPEKETANSIKEKEPSPKVALKERNR
VVPESDSPVKRSGRKAAQVLSSEGEEEDEAPGTPKVQKPVSDSKQSSPPSPDTCPENSPF
FSSPSMEISPSGFPKRRTARKQLPKRTIQDTEEEQSEDKDRAAKKRKKEEEAQTPVESVT
ETEDGKQKEEKEGDKSIVPLEPAKSPESVTQTKTENMPVCKGGVKQEPQEGEQSKPPARG
AKTLSSFFAPRKPATKAKVKQEESGAPGKEETKGTLDPTDYNPSKSNYHPIEDACWKHGQ
KVPFLAVARTFEKIEEVSARLKMVETLSNLLRSVVALSPPDLLPVLYLSLSRLGPPQQGL
ELGVGDGVLLKAVAQATGRQLESIRAEVAEKGDVGLVAENSRSTQRLMLPPPPLTTSGVF
TKFCDIARLTGSASMAKKMDIIKGLFVACRHSEARFIARSLSGRLRLGLAEQSVLAALAQ
AVSLTPPGQEFPPAVVDAGKGKTTEARKMWLEEQGMILKQTFCEVPDLDRIIPVLLEHGL
EHLPEHCSLSPGVPLKPMLAHPTRGVSEVLKRFEEVDFTCEYKYDGQRAQIHVLEGGEVK
IFSRNQEDNTGKYPDIISRIPKIKLPSVTSFILDTEAVAWDREKKQIQPFQVLTTRKRKE
VDASEIQVQVCLYAFDLIYLNGESLTRQPLSRRRQLLRENFVETEGEFVFATSLDTKDIE
QIAEFLEQSVKDSCEGLMVKTLDVDATYEIAKRSHNWLKLKKDYLDGVGDTLDLVVIGAY
LGRGKRAGRYGGFLLAAYDEESEELQAICKLGTGFSDEELEEHHQSLKALVLPTPRPYVR
IDGAVAPDHWLDPSVVWEVKCADLSLSPIYPAARGLVDKEKGISLRFPRFIRVREDKQPE
QATTSDQVACLYRKQSQIQNQHNSDLDSDFEDCY
NT seq
2805 nt
NT seq
+upstream
nt +downstream
nt
atgagaaaaaaagagcaagagaggaaaggggagaactctgccaccaccatgcagagaagt
attatgtcatttttccagcccacaaaagagggtaaagcaaagaagccggagaaggagaca
gccaacagcatcaaagagaaggagccttctccaaaggtggcattgaaggagaggaatcga
gtggtgcctgagagtgattctccagtgaagaggtcaggaaggaaggcagcccaggtccta
agcagcgaaggggaggaggaggatgaagctcctggcactcctaaagtccagaagcctgtg
tcagactccaaacaaagctctccccccagccctgacacatgtcctgagaacagtcctttc
ttcagtagcccctccatggaaatctccccatcaggattcccaaaacgtcgtactgctcgg
aagcagctcccgaaacggacaattcaggacaccgaggaggagcagagtgaggacaaagac
agagcagccaagaaaaggaagaaggaagaagaagcacagaccccagtggaaagcgtcaca
gagactgaagatggaaaacagaaggaagaaaaggaaggcgacaagtccatagtgcccctt
gagcctgcaaagtcccctgagtcggtaacccagacaaagacagagaacatgccagtgtgt
aagggcggcgtgaaacaggagcctcaggaaggggagcagagcaagcctcctgccagaggc
gccaagaccctcagcagtttctttgctccccggaagccagcaacgaaagccaaagtgaaa
caagaagagtcaggtgctccagggaaggaagagaccaagggaaccctggatccaacagat
tacaatccttccaagagtaactaccatcccattgaagatgcctgctggaaacatggccag
aaagtcccttttcttgctgtggcccggacatttgagaagattgaggaggtctctgctcgg
ctcaagatggtggagacactgagcaacttgctgcgctccgtggtggccctgtcgcctcca
gacctgcttcctgtcctttacctcagcctcagccgcctcgggccacctcagcagggactg
gagctgggtgttggtgatggtgtcctccttaaggcagttgcccaggccacaggtcggcag
ctggagtccatccgggctgaggtagctgagaagggtgacgtggggctggtggccgagaac
agccggagcactcagagactcatgctgcccccacctccgctcaccacctccggggtcttt
accaagttctgtgacattgcccggctcactggcagtgcttccatggccaagaagatggac
atcatcaagggcctttttgtcgcctgccgccactcggaagcccggttcattgccaggtcc
ctaagtggacggctgcgcctcgggctggctgagcagtcggtgttggctgcgcttgcccag
gctgtgagcctcacaccccctggccaagagtttccgccagctgttgtggatgctgggaag
ggcaagaccaccgaggccagaaagatgtggttggaagaacaaggcatgatcttgaagcag
accttctgtgaggtgcctgacctggatcgaatcatcccggtactgctggaacatggcctg
gaacatctcccagagcactgcagtctgagcccaggagtccctcttaaaccaatgctggcc
catcccactcggggtgtcagcgaagtactgaaacgctttgaggaggtagacttcacctgc
gagtacaaatacgatgggcagcgggcacagattcatgttctggaaggtggagaggtgaag
atcttcagcaggaaccaggaagacaacacaggaaagtaccctgacatcatcagccgcatc
cccaagattaaactcccctcagtcacatcttttatcctggacaccgaggctgtggcctgg
gaccgggaaaagaagcagatccagccattccaagtgctcaccactcgcaagcgcaaggag
gttgatgcatcggagatacaggtgcaggtgtgtctgtatgcctttgatctcatctacctc
aacggagagtccctgactcgccagcccctgtctcgacgccggcagctgctccgggagaac
ttcgtggagacagagggtgagtttgtcttcgccacctccctggacaccaaggacattgag
cagatcgccgagttcttggagcagtcggtgaaggactcctgtgaggggctgatggtgaag
actctggatgtcgatgccacctatgagatcgccaagaggtcacacaactggctcaagctg
aaaaaggactaccttgacggtgtgggcgacactctggaccttgtggtgattggtgcctac
ctgggccgggggaagcgtgccggccggtatgggggcttcctcttggcggcctatgatgag
gagagtgaagagctgcaggccatatgcaagctgggaactggattcagcgatgaagagctg
gaggagcatcaccagagcctaaaggccctggtattgccgaccccacgtccctatgtgagg
attgatggggcagtggccccagaccactggctggacccaagtgtcgtatgggaggtgaag
tgtgcggacctctccctgtcccccatctaccctgctgcacggggcctggtggacaaggag
aaagggatctcccttcgtttccctcggttcattcgtgtccgtgaagacaagcagccagag
caggccaccaccagtgaccaggtggcctgtttgtaccggaagcagagtcagattcagaac
cagcacaactcagacttggactccgactttgaggactgctattaa
DBGET
integrated database retrieval system
