Phodopus roborovskii (desert hamster): 127238899
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Entry
127238899 CDS
T08852
Symbol
Sympk
Name
(RefSeq) symplekin
KO
K06100
symplekin
Organism
prob
Phodopus roborovskii (desert hamster)
Pathway
prob03015
mRNA surveillance pathway
prob04530
Tight junction
Brite
KEGG Orthology (KO) [BR:
prob00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
127238899 (Sympk)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04530 Tight junction
127238899 (Sympk)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
prob03021
]
127238899 (Sympk)
03019 Messenger RNA biogenesis [BR:
prob03019
]
127238899 (Sympk)
Transcription machinery [BR:
prob03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
127238899 (Sympk)
Messenger RNA biogenesis [BR:
prob03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
127238899 (Sympk)
U7-dependent histone pre-mRNA processing factors
127238899 (Sympk)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Symplekin_C
SYMPK_PTA1_N
PDS5
Cnd1
INTS7_N
Motif
Other DBs
NCBI-GeneID:
127238899
NCBI-ProteinID:
XP_051063628
UniProt:
A0AAV0A9P0
LinkDB
All DBs
Position
Unknown
AA seq
1276 aa
AA seq
DB search
MASGSGDSVTRRSVASQFFTQEEGPGVDGMTTSERVVDLLNQAALITNDSKITVLKQVQE
LIINKDPTLLDNFLDEIIAFQADKSIEVRKFVIGFIEEACKRDIELLLKLIANLNMLLRD
ENVNVVKKAILTMTQLYKVALQWMVKSRVINDLQEACWDMVSSMAGEIILLLDSDNDGIR
THAIKFVEGLIVTLSPRMADSEVPRRQEHDISLDRIPRDHPYIQYNLLWEEGKAALEQLL
KFMVHPAISSINLTTALGSLANIARQRPMFMSEVIQAYETLHANLPPTLAKSQVSSVRKN
LKLHLLSVLKHPASLEFQAQITTLLVDLGTPQAEIARNMPSSKDSRKRSRDDADSTLKKM
KLEPNLGEDDEDKDMEPGPSGTSKASAQISGQSDTDITAEFLQPLLTPDNVANLVLISMV
YLPETMPASFQAIYTPVESAGTEAQIKHLARLMATQMTAAGLGPGVEQTKHCKEEPKEEK
VVKPESVLIKRRLSAQGQAISVVGSLSSMSPLEEEAPQAKRRPEPIIPVTQPRLAGAGGR
KKIFRLSDVLKPLTDAQVEAMKLGAVKRILRAEKAVACSGAAQVRIKILASLVTQFDSGL
KAEVLSFILEDVRGRLDLAFAWLYQEYNAYLAAGASGTLDKYEDCLIRLLSGLQEKPDQK
DGVFTKVVLEAPLITESALEVIRKYCEDESRAYLGMSTLGDLIFRRPSRQFQYLHVLLDL
SSHEKDRVRSQALLFIKRMYEKEQLREYVEKFALNYLQLLVHPNPPSVLFGADKDTEVAA
PWTEETVKQCLYLYLALLPQNHKLIHELAAVYTEAIADIKRTVLRVIEQPIRGMGMNSPE
LLLLVENCPKGAETLVTRCLHSLTDKVPPSPELVKRVRDLYHKRLPDVRFLIPVLNGLEK
KEVIQALPKLIKLNPIVVKEVFNRLLGTQHGEGNSALSPLNPGELLIALHNIDSVKCDMK
SIIKATNLCFAERNVYTSEVLAVVMQQLMEQSPLPMLLMRTVIQSLTMYPRLGGFVMNIL
ARLIMKQVWKYPKVWEGFIKCCQRTKPQSFQVILQLPPQQLGAVFDKCPELREPLLAHVR
SFTPHQQAHIPNSIMTILEASGKQDPEVKEAPAGPLEEDDLEPLALAPAPAPAPRPPQDL
IGLRLAQEKALKRQLEEEQKLKPTGVGAPIVSASSSVPVVPAARAGPTPAEEAMEYREEG
PECETPAIFISMDDDSGLAETTLLDSSLEGPLLKEAATVGPSSKDERSPQSLNHAVEEAL
TTSSPEAREPESKGDS
NT seq
3831 nt
NT seq
+upstream
nt +downstream
nt
atggcaagtggcagtggggacagcgtcacccgccggagcgtggcatcacagtttttcaca
caggaggaagggccaggcgttgatggcatgaccacttcagagagggtggttgatcttctc
aaccaggcagcgctgatcaccaatgactcaaagatcacagtgctcaaacaggtccaggag
ctgatcatcaacaaagaccccaccctgctcgacaacttcttggatgagatcatcgctttc
caagcagacaagtccatcgaagtgcgcaaattcgtcattggcttcatcgaggaggcatgc
aagcgggacatcgagctcctgctaaaactgattgccaacctcaacatgctcctgcgggac
gaaaacgtgaatgtggtgaagaaagccatcctcaccatgactcaactctacaaggtggcc
ctgcagtggatggtgaaatctcgagtcatcaacgatctccaggaggcctgctgggacatg
gtgtcctccatggctggggaaatcatcctgctgttggattccgacaatgacggcatccgt
acacatgccatcaagtttgtagagggcctcattgtcaccctgtcaccccgcatggctgat
tcagaggtcccccgacgccaagagcatgacatcagtctggaccgaatccctcgagatcac
ccctacatccagtataatctcctgtgggaagaaggcaaggcagccttggagcagctgctg
aagttcatggtacaccctgccatctcctccatcaacctgaccacagccctgggctccctt
gctaacattgcccgccagagacccatgttcatgtccgaggtgatccaggcctatgagacc
ctgcatgccaacctgcccccaacactggccaagtcccaggtgagcagcgtgcggaagaac
ctcaagctgcacttgctgagcgtgctcaagcaccctgcctccttggagttccaggcccag
atcaccaccctgctggtggacctgggcaccccccaggcagagatcgcccgcaacatgccc
agcagcaaggattcccgcaaacggtcccgggatgatgcggactccaccttgaagaagatg
aagctggagcccaacttgggagaagatgatgaggacaaagacatggagcctggcccatca
gggacttcgaaggcctcagcccagatctcaggccagtcagacacggacatcaccgctgag
ttcttgcagcctctgctgacacctgacaatgtggccaatctggtcctcatcagcatggtg
tacctgcctgagaccatgcctgcctccttccaagccatctatacccccgtggagtcagca
ggcaccgaagcccagatcaagcacctggctcggctcatggccacacagatgacggctgca
ggactgggacctggtgtggagcagacaaagcattgcaaggaagagcccaaggaggagaag
gtagtgaagcctgagagtgtcctgatcaagcggcgcctgtcagcgcagggccaggccatc
tctgtggtgggctctctgagctccatgtcccccttggaggaggaggcaccccaggccaag
aggaggcccgaacctatcatcccagtcacacagccacggctggcgggtgctggtgggcgc
aagaagatcttccgtctgagtgacgtgctgaagccgctaacggatgcccaggtggaagcc
atgaaactgggagctgtgaagaggatcctgagggccgagaaggctgtggcctgcagtggg
gccgcgcaggtgcgcatcaagattctggccagccttgtgacacagttcgactctgggctc
aaggcagaggtgctgtccttcatcctggaagatgtccggggccgcctggacctggctttc
gcctggctctaccaggagtacaatgcctacctagcagcaggggcttcaggcactctggac
aagtatgaggactgcctcatccgcctgctctctggcctgcaggagaaaccggaccagaag
gatggggtcttcaccaaggtggtattggaggccccgctgatcacagagagtgccttggag
gtgatacgcaagtactgtgaggatgagagccgcgcctacctgggcatgtcgaccctggga
gacctgatcttcaggcgtccttctcgccagttccagtacctgcacgtgctcctcgacctc
agctctcatgagaaggacagggtgcgctcccaggctctgctcttcattaagcgcatgtat
gagaaggagcagcttcgagagtacgtggagaaattcgccctcaactacctgcagctcctg
gtccaccccaacccgccctcggtgctcttcggagctgacaaggacacagaggtggccgcg
ccctggaccgaggagacagtgaagcagtgtctgtatctctatctggctctcctgcctcag
aaccacaagctgatccacgagctggcagccgtgtacacagaggccatcgccgacatcaag
cggaccgtgctgagggtcattgagcagccgatccgagggatgggcatgaactcaccagag
ctgctactgctggtggaaaactgccccaaaggggcagagacgctggtcacccgctgtctg
cacagcctcacggacaaagtgccaccgtccccagagctggtgaagcgggtccgagacctg
taccacaagcggctgcctgatgtgcgcttcctcatccccgtgctcaacggtttggagaag
aaagaggtgatccaggccctgcccaagctcatcaaactcaaccccatcgtggtgaaggag
gtcttcaaccgcctgctgggcacccagcatggtgaagggaactcggccttatcccccctg
aacccaggagagctgctgattgcattgcacaacattgactcagtgaaatgtgacatgaaa
tctatcatcaaagccaccaacctgtgctttgctgagcggaatgtgtatacgtcggaggtg
ctggctgtggtgatgcagcagctgatggagcagagccccctgcccatgctgctcatgcgg
accgtcatccagtccctgaccatgtacccccgcctggggggcttcgtcatgaacatcctg
gcccgactcatcatgaagcaggtgtggaagtaccccaaggtatgggagggcttcatcaag
tgttgccagcgcaccaagccccagagcttccaagtcatcctgcagctacctccgcagcag
cttggcgcggtctttgacaagtgccctgagctccgggagccactgctggcccacgtgcgc
tccttcaccccccaccagcaagcgcatatccctaactccatcatgaccatcctggaggcc
agcggcaaacaggaccccgaagtgaaggaagcacctgcagggcccctggaagaggatgac
ctggagcccttggctttggctccggcccctgctcctgctccgcggccccctcaggacctc
atcggcctgcgattggctcaggagaaggccctgaagcggcagctagaggaggagcagaag
ctgaagcccacaggcgtgggagcgcccattgtctcagcatcctcctccgtgcccgtggtg
ccggcagcccgagccggtcccaccccagctgaggaggccatggaataccgggaggagggt
ccggagtgcgagaccccggccatcttcatcagcatggacgatgactcagggctggccgaa
accacactcctcgactctagtcttgagggtcccctgcttaaggaggcagcaacagtcgga
ccgagctccaaggatgagcggagcccccagagcctcaaccacgcagtggaggaagccttg
acgacctccagcccggaggccagggagcctgagagcaagggggacagctga
DBGET
integrated database retrieval system
