Prosthecochloris sp. CIB 2401: Ptc2401_00654
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Entry
Ptc2401_00654 CDS
T04424
Symbol
rhlE
Name
(GenBank) ATP-dependent RNA helicase RhlE
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
proc
Prosthecochloris sp. CIB 2401
Pathway
proc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
proc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Ptc2401_00654 (rhlE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
proc03019
]
Ptc2401_00654 (rhlE)
Enzymes [BR:
proc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Ptc2401_00654 (rhlE)
Messenger RNA biogenesis [BR:
proc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Ptc2401_00654 (rhlE)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
AAA_19
DNA_Packaging_2
P-loop_SecA
Motif
Other DBs
NCBI-ProteinID:
ANT64449
LinkDB
All DBs
Position
692864..694096
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AA seq
410 aa
AA seq
DB search
MDPILQSLHEEGYSRPTPIQEQAIPVILKGRDLLGCAQTGTGKTAAFAIPVLQLLAADRV
AAKKPRIRGLVVTPTRELAIQIGESFEAYGRYTGLRTTVIFGGVNQNPQIKALNKGTDIL
VATPGRLLDLCGQGHISLREIELFVLDEADRMLDMGFIHDIRKLLKLLPEKKQSLFFSAT
MPPEIVTLAGSILHNPSKVTVTPVSSTVDTIRQQVYFVDRDNKRQLLLHLLHDNDLETVL
VFTRTKHGADKVVRFLNKHDITAAAIHGNKGQGARQKALTAFKERSMRVLVATDIAARGI
DVDELEYVINFDMSNIPETYVHRIGRTGRAGSRGTAISFCDAEEKAYLKDIEKLIAKSIP
RVTGHPYPLTESAVAVTTSGLERPGGSGRRQGGTSASNPQQRKFRRKQAK
NT seq
1233 nt
NT seq
+upstream
nt +downstream
nt
atggaccccattctgcagtcgctgcatgaagagggatactctcgccctacccccatccag
gagcaggctatccccgttatcctcaaaggacgcgacctgctcggctgtgcccagacaggt
acgggaaaaactgctgcatttgccattccagtgctgcagctgcttgctgcagaccgtgtg
gccgccaaaaagccacggatccgggggctggtcgtgactcctacacgggagctggccatt
cagatcggcgaaagtttcgaagcttacgggcgttataccgggctccgtaccaccgtcatt
ttcggaggtgtcaaccagaacccccagatcaaggcgctcaataaagggaccgacatactg
gttgcaaccccgggaaggcttctcgacctttgtggccagggacatatcagcctcagggag
atcgagcttttcgtgctcgatgaggcggacaggatgctcgacatggggtttatccacgat
atccgcaaactcctcaagctgctgcccgaaaagaaacagtcgctctttttctcagctacc
atgcctccggaaattgtcacgctggcaggctcgatcctccataatccatcaaaggtgacg
gttacccctgtctcatccactgtcgacaccatacgccagcaggtctatttcgtcgatagg
gataacaaacgccagttgctcctccacctgcttcatgacaacgaccttgagacagtcctg
gtgttcacccgcacaaagcatggggctgacaaggtggtgcgtttcctcaacaagcacgac
attacagcagcagccatccatggcaacaaggggcagggcgcacgccagaaagcactgacg
gcattcaaggaacggagcatgcgggtgttggtcgcaaccgatattgcggcacgcggtatc
gacgtcgatgaactcgagtatgtcatcaacttcgacatgtccaatatcccggaaacctat
gtgcaccgcatcggacgtaccggacgtgccggatcgaggggtacagcgatttccttctgc
gatgccgaggaaaaagcctacctgaaggatatcgaaaaactgatcgccaaatcgatcccg
cgcgtaaccggacatccttatccgttgacggagagtgctgtcgcagtcacgacttcagga
ctggagcgtcccggcggcagtggcaggaggcagggtggtacatcagcaagcaacccgcag
cagcggaagtttcgtcggaaacaggcgaagtag
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