Prosthecochloris sp. CIB 2401: Ptc2401_01016
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Entry
Ptc2401_01016 CDS
T04424
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
proc
Prosthecochloris sp. CIB 2401
Pathway
proc03030
DNA replication
proc03430
Mismatch repair
proc03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
proc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Ptc2401_01016 (dnaE)
03430 Mismatch repair
Ptc2401_01016 (dnaE)
03440 Homologous recombination
Ptc2401_01016 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
proc03032
]
Ptc2401_01016 (dnaE)
03400 DNA repair and recombination proteins [BR:
proc03400
]
Ptc2401_01016 (dnaE)
Enzymes [BR:
proc01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
Ptc2401_01016 (dnaE)
DNA replication proteins [BR:
proc03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
Ptc2401_01016 (dnaE)
DNA repair and recombination proteins [BR:
proc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
Ptc2401_01016 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
Motif
Other DBs
NCBI-ProteinID:
ANT64794
UniProt:
A0A1B1Q1R6
LinkDB
All DBs
Position
1024887..1028408
Genome browser
AA seq
1173 aa
AA seq
DB search
MQSSPIFPEQLFEACRKVGMTALAVTDYSAMFNMPELFALASNAGVKLIIGSEVLMQEAE
MRQGGGHHDASTLVLLVKDETGYRNLCILLSRAARNGFANGMPHVDPEVLKHHHEGLVCL
SGGYAGRIGRALLAGHYEEALAYASVYKGIFGDDFFLELQDHKTAFDERLKEETLRLGKE
LGIRFVATNNVHYLEKRDAGRYQAMVAIRTKERLSSPHLKCLSGTENYFKTAAEMQALFD
DSNKELSNTVAIAESCSYAFSQQDPRLPHFPLPDGFDDEAAYLRHLTYEGAKVKYADPAS
QGLTWQDVEARIERELDVITSMGFSSYFLIVSDLIAASRKLGYSVGPGRGSAAGSIIAYL
TGITRIDPLRYKLLFERFLNPERLSMPDIDIDFTPVGKQRVLDYTVEKYGDASVAKVVAI
GTLGARAAIRDAGRVLEVPLQVVDRLAKLVPSRPGVTLVQALDEVRELKELVESSPQNSQ
LMDYALALEGRARNVSMHAGAVVITDGPLEEQVPLYVSNKIETEERKFADEYDAEELERG
AQKASSDQKQVVTQFDKNWIETAGLLKIDYLGLETLAVIDETLHLIKKLHGVEIDLESVP
MTDRKTFRIFQEGKMAGIFQFESQGMQTYMMQLQPTQIGDIIAMSALYRPGALNARIDAK
RNAVDLFVDRKHNREPIDYMHPMLEEILKETYGVIVYQEQVMQISQVMGGFSLAKADNLR
KAMGKKKPEIMHKFKADFVEGAVNQGVHDKLANRIFDLMAEFAGYGFNKSHSAAYGVLAY
WTAYLKAHYPAEFMTAILNSEIGDTVRMKHLSDEARSFNIPILPPNVNESDALFAIETHE
GKPAIRVGLSAIKQVGNAARAVVTARLRRKKKYTNLFDLTASVDLRAMNTKSLECLIMAG
ALDELDPNRGKLLANIDKAIKFGKLQNHSVTTGQCGFFTSDDAASDDALYPDMDPADPLP
ESEKLQAEKKLVGVYLSRHPLDPFRRDWEAFANLHLDNRQVQQSRQYKVIGVIVSTKPHL
DRKGNQMLFGVIEDFRGKADFTVFASVYEQYRQWLKTDEPVMLVAEAEAATGMLKLLVRE
VVPLKKVRESCIDRVVLRIDAQDAGERDKLLAVRELFEKHKGGTGVDFEIKVENGESVEV
VRMFARSTPVDPSDEFLQALEKILGPDNVQIAG
NT seq
3522 nt
NT seq
+upstream
nt +downstream
nt
atgcagagtagtcccatctttccagagcagcttttcgaagcatgcaggaaagtcgggatg
acggctctggctgtgaccgattattcggctatgttcaatatgccggagctctttgccctt
gccagcaatgcaggggtgaagctgattatcggcagcgaagtgctgatgcaggaagctgag
atgaggcaagggggcggccatcacgatgcatctacccttgtgcttctcgtgaaagatgaa
acggggtatcggaacctctgtatcctgctttcgagggcagcgaggaatggctttgctaac
ggtatgccgcatgtagaccctgaagtactcaagcatcaccatgagggcctggtctgtctt
tcaggggggtatgctggtcgtatcggtcgggcgctgcttgccgggcattatgaggaagct
ctagcatacgcatcggtgtacaaggggattttcggtgatgatttctttcttgaactgcag
gatcataagactgcttttgacgagcgcctgaaagaggagaccttgagacttggcaaagag
ctcgggatcaggttcgtggcgaccaataacgtgcattaccttgaaaagagggatgctggt
cgttaccaggctatggtggccatcaggaccaaggaacggctgtcaagtcctcatctcaaa
tgcctttcgggaactgaaaactatttcaagactgctgccgagatgcaggcgctttttgat
gatagcaacaaggaactttcaaatacggtcgctatcgctgagtcgtgcagttatgcattc
agccagcaggacccgaggcttccgcattttcctctccccgatggttttgatgatgaggca
gcttatctgcgccatcttacctatgaaggagcaaaggtcaaatatgcggatccggcatcg
caagggctgacatggcaggatgttgaggcgcgtatagagcgggagctcgatgtcattacc
agtatggggttcagttcctacttcctgattgtcagtgacctgatcgcggcatccaggaaa
ctggggtattccgtggggccaggaaggggatctgctgctggcagcatcatcgcttacctg
accgggattacgcgtatcgatccgcttcgctacaagctgctcttcgaacgtttcctgaat
ccggaacgcctctccatgccggatatcgatatcgatttcacacctgtcggcaagcagagg
gttctcgattacactgtggagaaatacggcgatgcaagtgttgcgaaagttgtcgctatc
ggtacgctcggggcccgggcggctatccgcgatgctggaagggtactcgaggtgccgttg
caggtagtcgatcgactggctaaactggtgccttcacggcccggggttaccctggttcag
gcactcgacgaggtgcgtgagctcaaggagctggtggagagcagtccgcagaattcgcaa
ctgatggattatgcgctcgctctcgaggggagagcacgcaacgtatctatgcatgccggg
gccgtagtcattactgatggtccacttgaggaacaggtgccgctgtatgtgtccaacaag
atcgagacggaagagcgtaaattcgccgatgagtacgatgccgaggagctggagcgggga
gcgcagaaggcctcgagtgatcagaagcaggtcgttacccagttcgacaagaactggatc
gaaacagcaggattgctcaagatcgattaccttggactggagacgcttgcggttatcgat
gaaaccctgcatctcatcaaaaagctccatggtgtcgagatcgatctcgaaagcgtgccg
atgactgatcgcaagacgttccggattttccaggaaggaaagatggccgggatattccag
ttcgaatcccagggtatgcagacctacatgatgcagctgcagccaacacagatcggggat
atcatcgctatgagtgcgctctaccgtcccggtgcgctcaatgcccggatcgatgccaag
cgtaatgcagtcgacctgtttgtcgatcgtaagcataacagggaaccgatcgactacatg
caccctatgctcgaggagatcctcaaagagacctatggtgtcattgtctaccaggagcag
gtgatgcagatttcccaggtgatgggtggtttttcgctggcgaaagctgacaatctccgc
aaggccatgggtaagaagaaacccgaaatcatgcacaagttcaaagctgattttgtcgag
ggagcggtcaaccagggtgtgcatgacaagctggccaaccgtattttcgaccttatggcg
gagtttgcaggttacggatttaacaagagccattctgcggcctacggtgttcttgcatat
tggacggcctatctcaaggcgcactatcctgccgagttcatgacggccatcctcaacagc
gagatcggcgatacggtccggatgaagcatctgagtgatgaggcaaggagcttcaatatt
ccgatcctgcctcccaatgttaacgagagcgatgccctgtttgcgattgaaacacacgag
ggcaaacccgctatccgggttggcctaagtgctatcaagcaggttggaaatgcagcaaga
gctgtggttaccgcccggttgagaaggaaaaagaagtataccaaccttttcgacctgacc
gcgtctgtagaccttcgggccatgaatacaaaatcgctcgagtgcctgatcatggctggt
gcgcttgatgaactcgaccccaacagggggaaactcctggccaatatcgacaaggcgatc
aagttcggaaagctgcagaatcactcggttacgacaggtcagtgcggattttttacctct
gacgatgctgcttcggatgatgccctctatcccgatatggatcctgccgatcccctgcct
gaatcagaaaagctgcaggcggaaaaaaaactggtcggggtctacctcagtcgtcatccc
ctggatccgttcaggcgggactgggaggcatttgcaaacctgcatctcgacaatcgccag
gtacagcaatcgcgccagtacaaggttatcggggtgattgtttcgacaaagccccatctg
gaccgcaaggggaaccagatgctgtttggtgttatcgaggatttcaggggaaaagcggat
tttacggtgtttgccagtgtgtatgaacagtaccgtcaatggcttaaaaccgacgagccc
gtgatgcttgttgccgaggccgaagctgcgaccggcatgcttaaactgctcgtgcgagag
gtggttcctttgaaaaaggtccgtgaaagctgcatcgaccgggttgtgctgaggatagat
gcccaggatgcaggggaacgtgacaagctgttggctgtgcgtgagctattcgaaaagcac
aaagggggaactggcgtggattttgaaatcaaagtggagaacggtgaatcggtagaggtt
gttcgtatgttcgcaaggagtactccggtagatccgtctgatgagttcctccaggctctg
gagaagatccttggaccggataatgtgcaaattgctggttga
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