Prosthecochloris sp. CIB 2401: Ptc2401_01689
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Entry
Ptc2401_01689 CDS
T04424
Symbol
rnr
Name
(GenBank) Ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
proc
Prosthecochloris sp. CIB 2401
Pathway
proc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
proc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Ptc2401_01689 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
proc03019
]
Ptc2401_01689 (rnr)
03016 Transfer RNA biogenesis [BR:
proc03016
]
Ptc2401_01689 (rnr)
Enzymes [BR:
proc01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
Ptc2401_01689 (rnr)
Messenger RNA biogenesis [BR:
proc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Ptc2401_01689 (rnr)
Transfer RNA biogenesis [BR:
proc03016
]
Prokaryotic type
tRNA degradation factors
Ptc2401_01689 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNB
OB_RNB
CSD2
S1
Rrp44_S1
S1CSD-TOTE-2
UreE_N
Motif
Other DBs
NCBI-ProteinID:
ANT65425
LinkDB
All DBs
Position
complement(1711583..1713802)
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AA seq
739 aa
AA seq
DB search
MTYLSDNEGKRFRSVELAKNLGYTESRNLPGFWYVLHKLQEEGVLDKDSKRCYGLAGQEL
PTYEDVIVQTKQFPCPDKEHYQVDKSYTGRITTHPNGYGFVCVEGFDDDIFINAESLGPA
IHGDEVEVLVTKVPQTYKTQQSPHQRCEGLVTNVLSRSLEVLVGTLQRKNRKYVLLPDSR
NILPEVSVRIKDAAGASDGHKVTLSDLEFTKSGIRGVVREVLGEAGSSEVEVSAIARGYG
IDETFDEKLLEEVTSIGDALTEEDMEGRLDIRDKAVFTIDPVDAKDFDDALSVEVLPKKC
YRIGVHIADVSHYVREGTLLDKEARKRATSVYLVDRVIPMLPSKLSEQICSLNPKVDRLA
FSVFFKVGPEGEVMQHEFRKTVIHSKRRFVYEDVDKILEKGKGSFYKELSVLDTISRKLR
DKRLSEGGLEFETEEVRFKLGSKGEPVEVVKKERLGSHRLIEEFMLLANRKVAEYITTKF
ALKDGTQYPSIYREHGSPKEEKIGILSNFVRKIGYNLELNGTSKDGTPKVTSAALRKLLK
DVHGSNVEFLVNELVLRSMAKALYTGNSDGHFGLGFEFYTHFTSPIRRYPDLVVHRLLFE
YEALRKRRKKLTASRRQEIGMVIDEVCRISNEREKSAVDAERDSIKLKQVEYMSAHVGKT
YSGVISGATEYGIYVRVEEFAIEGLVHMRNLTDDYYEFDPNSYSLVGKRRKRKLQIGQRL
KIKIHKVDMQRRTIDLVLG
NT seq
2220 nt
NT seq
+upstream
nt +downstream
nt
atgacctatctctcggataacgagggaaaacggttcaggtctgtagagcttgccaaaaac
cttgggtataccgagtcacggaatcttcccggattctggtatgtgctgcataaactccag
gaagaaggggttctcgacaaggattccaagcgttgctatggccttgcgggccaggagttg
ccaacgtatgaagatgtcattgtccagaccaagcagtttccatgtcccgacaaggaacac
taccaggtcgacaagagttatacgggtcgtattacaacccatcccaacggttacggcttt
gtctgtgtcgagggatttgatgacgatattttcatcaacgcagaatctcttgggccagcc
attcatggcgacgaggttgaagtactggtcaccaaggttcctcagacctacaaaacccag
cagagtcctcaccagcgttgtgaaggtcttgttaccaacgttctgtcacgttctctcgag
gtgctggtagggacactgcagcgcaaaaacagaaaatatgtcctcctgcccgattcccgc
aatattcttccggaagtcagtgttcgcatcaaggacgcggccggggcatccgatgggcat
aaggtaacactcagcgatctggaatttacgaaatccggtatccgcggtgtagtcagggag
gtgcttggtgaagcaggttcgtctgaagtagaggtgagtgctattgcccgtgggtacggt
atcgacgagacattcgatgaaaagcttcttgaggaggttacctcgataggtgatgccctg
actgaagaggacatggagggacgactcgatattcgcgacaaggccgtctttactatagat
ccggtagatgcaaaggatttcgacgacgcgctgtcggtcgaggtgcttcctaaaaagtgc
tatcgtattggcgtgcatattgccgatgtgtcgcactatgttcgcgaagggacccttctc
gacaaggaagcccgcaaaagggctacttcggtctaccttgtcgaccgcgttatcccgatg
ctcccctcgaagctttccgaacagatctgcagcctcaaccccaaggttgaccggcttgcg
ttctctgtctttttcaaggttgggccagaaggcgaagtgatgcagcacgagttccgcaag
accgtgattcactccaagcgtcggtttgtctacgaggatgtggacaagattctcgaaaaa
ggtaagggatcgttttataaagagctttccgtacttgatactataagtcgtaagcttcgt
gacaagcgtctctcggaaggcggcctcgagttcgagactgaagaggtacgcttcaaactg
ggcagcaagggcgaacctgtcgaggtggtcaagaaggagcgtcttggcagtcacaggctg
atcgaggagttcatgctgcttgccaacaggaaggtggcggaatacattaccacaaagttt
gccctgaaagacggcactcagtatccttcaatctacagggagcatggctccccgaaagag
gaaaaaatcggtatcctttcgaacttcgtacgaaagatcgggtataaccttgaacttaac
ggtacatcgaaagacggtactcctaaagtgacctcggccgcattgcgtaagttgctcaag
gatgtacatggaagcaacgtggaattcctcgtcaacgagttggtactgcgttccatggct
aaggctctctataccggtaacagcgatgggcacttcggactcggcttcgagttctataca
cacttcacctcgcctatcaggcgttacccggaccttgtggtgcaccgccttctcttcgaa
tacgaagcgctgcgcaaaagacgcaagaagcttaccgccagtcgtcgtcaggaaataggg
atggtgatcgacgaggtttgccgcatatctaacgaacgcgaaaaaagtgctgtggatgcg
gagcgtgattctatcaagctcaagcaggtcgagtacatgtcggcccatgtcggcaagact
tactccggtgttatttcaggagctaccgagtatggcatctacgtccgcgtagaggagttt
gccatagaagggcttgtgcatatgcgcaacctcacagacgattattacgaattcgatccc
aacagctactcactggtcggcaagcggcgtaagcgcaagctgcagataggtcagcggctg
aagatcaagattcacaaggtcgatatgcaacgacgcaccattgacctggtgcttggataa
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