Prodigiosinella aquatilis: PCO85_01400
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Entry
PCO85_01400 CDS
T09220
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
prod
Prodigiosinella aquatilis
Pathway
prod03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
prod00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
PCO85_01400 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
prod03021
]
PCO85_01400 (rpoC)
03400 DNA repair and recombination proteins [BR:
prod03400
]
PCO85_01400 (rpoC)
Enzymes [BR:
prod01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
PCO85_01400 (rpoC)
Transcription machinery [BR:
prod03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
PCO85_01400 (rpoC)
DNA repair and recombination proteins [BR:
prod03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
PCO85_01400 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-ProteinID:
WJV54170
LinkDB
All DBs
Position
301774..305997
Genome browser
AA seq
1407 aa
AA seq
DB search
MKDLLKFLKAQTKTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCAR
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSL
PSRIGLLLDMPLRDIERVLYFESYVVVEGGMTNLERRQILTEEQYLDALEEFGDEFDAKM
GAEAIQALLKSMDLEQECEQLREELNETNSETKRKKLTKRVKLLEAFIQSGNKPEWMILT
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQ
EAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPY
LRLHQCGLPKKMALELFKPFIYGKLELRGLATTIKAAKKMVEREEAVVWDILDEVIREHP
VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA
RALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTRDCVNAKGEGMVLTGPKEAERIYRAG
LASLHARVKVRITEEIRNTEGESIHRTSIIDTTVGRAILWMIVPQGLPFSIVNQPLGKKA
ISKMLNTCYRILGLKPTVIFADQIMYTGFAYAARSGVSVGIDDMVIPEKKAGIIEEAETE
VAEIQEQFQSGLVTAGERYNKVIDIWAAANERVAKAMMENLSVEDVVNRDGEVEQQVSFN
SIFMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEGGDVKEPLRERVL
GRVTAEDVIKPGTADILVPRNTLLNEKWCDLLEENSVDAVKVRSVVSCETDFGVCAKCYG
RDLARGHIINKGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVKNKGSLKL
FNAKFVMNNVGKLVITSRNTELKLIDEFGRTKESYKVPYGAVMAKGDSADVVGGETVANW
DPHTMPVITEVSGNIRFTDMIDTQTITRQTDELTGLSSIVILDSAERTGGGKELRPALKI
VDANGNDVLIPGTDMPAQYFLPGKAIVQLEDGVQINAGDTLARIPQESGGTKDITGGLPR
VADLFEARRPKEPAILAEISGVVSFGKETKGKRRLVITPIDGSEPYEEMIPKWRQLNVFE
GELVERGDVISDGPESPHDILRLRGVHAVTRYITNEVQDVYRLQGVKINDKHIEVIVRQM
LRKCTIASSGSSEFLEGEQAEISRVKIANRQLEANGKISATYARDLLGITKASLATESFI
SAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYSYHQERMRRRQVVDTPV
TPQVSAEEATANLAELLNAGLGNNDDK
NT seq
4224 nt
NT seq
+upstream
nt +downstream
nt
gtgaaagacttattgaagtttctgaaagcgcaaactaaaaccgaagagtttgacgcgatc
aaaattgctctggcttcgccagacatgatccgttcctggtcttttggtgaagttaaaaag
ccagagactattaactatcgtacgttcaaacctgaacgtgatggccttttctgtgctcgt
atctttgggccagtaaaagattacgagtgcttgtgcggtaagtacaagcgcttgaaacac
cgtggtgttatttgtgagaagtgcggcgttgaagtgacccagaccaaagtacgtcgtgaa
cgtatgggacacatcgaactggcttctccaacggcacacatctggttcctgaaatcgttg
ccatcccgcatcggtttactgctggatatgccgctgcgtgatatcgaacgcgtactgtac
tttgaatcctatgtagtggttgaaggcggtatgaccaacctggagcgccgacagatcctg
actgaagagcagtatctggatgcgctggaagagtttggtgatgagttcgatgccaaaatg
ggtgccgaagctattcaggccttgttgaaaagcatggatctggagcaggaatgcgaacaa
ctgcgtgaagaattgaatgaaaccaactctgaaaccaaacgcaagaagctgaccaagcgc
gtcaagttgctggaagccttcatacagtctggcaacaagccggagtggatgatcctgacc
gttctgccggttctgccgccagatctgcgtccgctggttccgctggatggcggtcgtttc
gcaacatcagatctgaacgatctgtatcgtcgcgttatcaaccgtaacaaccgtctgaaa
cgtctgctggatctggctgcgccggacatcatcgtacgtaacgaaaaacgtatgctgcag
gaagcggttgatgccctgctggataacggtcgtcgcggtcgtgcaatcaccggttctaac
aaacgtcctctgaaatctttggctgacatgatcaaaggtaaacagggtcgtttccgtcag
aacctgctcggtaagcgtgttgactactccggtcgttccgttattaccgtgggtccatac
ctgcgtctgcatcagtgcggtctgccgaagaaaatggcgttggaactgttcaaaccgttc
atctacggcaagctggaactgcgtggtctcgctaccaccatcaaagctgcgaagaaaatg
gttgagcgtgaagaagctgtcgtttgggatatcctcgacgaagtcattcgcgaacacccg
gtactgctgaaccgtgcgccaactctgcaccgtttgggtattcaggcgtttgaaccggta
ctgatcgaaggtaaagccatccagctgcatccgctggtttgtgcggcatacaacgccgac
ttcgatggtgaccagatggctgttcacgtaccgctgacactggaagcccagttggaagcg
cgtgcgttgatgatgtctaccaacaacattctatcaccggcgaatggtgagccaatcatc
gttccttcccaggacgtggtgttgggtctgtactacatgacccgtgactgtgttaacgcc
aaaggcgaaggcatggtgttgacggggccgaaagaagctgagcgtatttatcgcgccggt
ctggcttccctgcatgcgcgtgtcaaagtgcgtatcaccgaagagatcaggaataccgaa
ggcgagtcgatacaccggacgtctattatcgatacaactgtaggccgtgcgatcctgtgg
atgatcgttccgcaaggtctgccgttctctatcgttaaccagccgttaggtaaaaaagct
atttctaaaatgctgaacacctgttatcgcattttgggcctgaagccgacggttatcttc
gctgaccagatcatgtacaccggttttgcttacgctgcccgttcaggtgtatccgtaggt
attgatgatatggtgatcccagagaagaaagcggggattatcgaagaagcagaaaccgaa
gttgcagagatccaggaacagttccagtctggtctagtaactgctggtgaacgctacaat
aaggttatcgatatctgggcggcggcaaatgaacgcgttgccaaggcgatgatggaaaac
ctgtctgttgaagatgtggttaatcgtgatggcgaagttgagcaacaggtttcttttaac
agtatctttatgatggctgactccggtgcgcgtggttctgcggcacagattcgtcagttg
gcgggtatgcgtggtctgatggcgaagccggatggctccatcatcgaaacacctattacc
gcaaacttccgtgaaggtctgaacgtactccagtacttcatctctactcacggtgcgcgt
aaaggtctggcggatacggcactgaaaaccgcaaactccggttatctgacacgccgtttg
gttgatgtggcgcaggatctggtagtcactgaagatgattgtggtactcacgaaggtatc
atgatgaccccggttatcgagggcggtgacgttaaagagccgttgcgtgagcgtgtgctt
ggtcgtgtgacggctgaagacgttatcaaaccgggtacagctgatattctggttccacgt
aatacgttgctgaacgagaaatggtgtgacctgctggaagaaaactctgtcgatgcggtt
aaagtccgttctgtcgtaagttgcgaaactgactttggcgtttgcgccaagtgttatgga
cgtgacctggcgcgtgggcacatcatcaacaagggtgaagcagtcggggttatcgcggca
cagtccatcggtgaaccaggtacgcagctgaccatgcgtacgttccacatcggtggtgcg
gcgtctcgtgcggcagccgaatccagtattcaggtgaagaacaaaggtagcctgaaactg
tttaacgcgaagttcgttatgaacaacgtgggtaaactggtgattacatcgcgtaatacc
gaattgaagctgattgatgaattcggtcgcaccaaagaaagctataaagtgccttatggc
gcggtcatggcgaagggcgatagtgctgatgttgtcggcggcgaaactgttgctaattgg
gatccgcataccatgccggttatcactgaagtgagcggtaacattcgcttcactgatatg
atcgacacccagaccatcactcgtcaaactgacgaactgactgggttgtcctctatcgtg
atactggatagtgcggaacgtaccggtggtggtaaagaactacgcccggcgttgaaaatt
gtagatgccaatggcaatgatgtattgattccgggtacggatatgcctgctcaatacttc
ttgccgggtaaagccattgtccagttggaagatggtgtacaaatcaatgcaggtgacaca
ctggcacgtatcccgcaggaatccggcggtaccaaggatattaccggtggtttgccacgt
gttgcggatctgttcgaagcccgtcgtccgaaagaaccggctattctggccgaaatcagc
ggtgtcgtttccttcggtaaagaaaccaaaggtaaacgtcgtctggtgattacaccaata
gatggcagtgaaccgtatgaagagatgattccgaagtggcgtcagctcaacgtgtttgaa
ggtgaactcgtagaacgcggagatgttatctccgatggcccggaatctccgcatgatatt
ctgcgtctgcgtggtgtccatgctgttacgcgctatatcaccaacgaggttcaggacgtt
taccgtctgcaaggtgttaagattaacgataaacacattgaagttatcgttcgtcagatg
ctgcgtaaatgtaccatcgcgagttcaggtagctcggagttcttggaaggcgaacaggcg
gaaatttcccgcgttaagattgccaaccgccaattggaagcaaacggcaagatctcggca
acgtatgcccgagatttgctgggtatcaccaaggcttctctggctaccgagtccttcatc
tctgcggcatcattccaggaaactactcgtgtgcttactgaagctgcggttgcgggtaaa
cgtgatgagctgcgcggtttgaaagaaaacgtgatcgtgggtcgtttgatcccggctggg
actggttattcgtaccaccaggagcgtatgcgccgtcgtcaggtggttgataccccggtt
acgcctcaggttagcgctgaagaagctacggccaatttggcagagttgttgaatgctggt
ctgggtaacaacgacgacaagtaa
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