Prodigiosinella aquatilis: PCO85_03255
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Entry
PCO85_03255 CDS
T09220
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
prod
Prodigiosinella aquatilis
Pathway
prod02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
prod00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
PCO85_03255 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
prod03021
]
PCO85_03255 (rpoD)
Transcription machinery [BR:
prod03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
PCO85_03255 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r1_1
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
Cwf_Cwc_15
Sas-6-like_oligomerization
Motif
Other DBs
NCBI-ProteinID:
WJV54492
LinkDB
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Position
complement(672274..674100)
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AA seq
608 aa
AA seq
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MEQNPQSQLKLLVTRGKEQGYLTYAEVNDHLPEDIIDSDQIEDIIQMINDMGIQVMEEAP
DADDLMLAENTADEDAAEAAAQVLSSVESEIGRTTDPVRMYMREMGTVELLTREGEIDIA
KRIEDGINQVQCSVAEYPEAISYLLEQYDRVEAGESRLSDLITGFVDPNAEENLAPTATH
VGSELSSDEIDDDEDEDDDEEEDDNSIDPELARQKFAELREQHETTRKAIKAHGRSHPSA
GAEILNLSEVFKQFRLVPKQFDLLVNSMRSMMDRVRTQERLIMKLCVEQSKMPKKNFVTL
FSGNETNNKWFAAAMAMGKPWSEKLHDVKEDVQRGLQKLHMIEEETGLTIEQMKDINRRM
SIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGY
KFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELAE
RMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATSESLRSATH
DVLAGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSE
VLRSFLDD
NT seq
1827 nt
NT seq
+upstream
nt +downstream
nt
atggagcaaaacccgcagtcacagctcaagctacttgtcacccgtggtaaggagcaaggc
tacctgacctatgctgaggtcaatgaccatctgccggaagatatcatcgactccgaccag
atcgaagacatcatccagatgattaatgacatgggcatccaggtgatggaagaagcaccg
gatgcagatgatcttatgttagccgaaaacactgctgacgaagatgcagcggaggctgca
gcacaggtgttatccagcgttgaatccgagattggacgtactaccgatccggtgcgtatg
tacatgcgtgaaatgggtaccgttgaactcttgacacgtgaaggtgaaatcgatattgcc
aaacgtattgaagacggtatcaatcaggtacagtgctccgttgctgagtaccctgaagcc
atcagctatttactggagcaatacgatcgtgttgaagcaggtgaaagccgtttatcagat
ttgatcactggctttgtcgatccaaacgcggaagaaaacctggcaccaacagcaacacat
gttggttctgagctttccagcgatgagatagatgacgacgaagacgaggatgatgacgaa
gaggaggacgataacagcattgatcctgagctggcccgtcagaaattcgccgaactgcgt
gagcagcatgagacgacccggaaggcaatcaaagcccacggacgcagtcatccaagtgct
ggtgcagaaattctgaatctgtctgaagttttcaaacaattccgattggtaccaaaacag
tttgacctgctggtcaacagcatgcgttcaatgatggatcgtgtgcgtacgcaagaacgc
ttgatcatgaagctgtgcgttgagcagagcaaaatgccgaagaaaaacttcgtcacactg
ttttccggcaatgaaaccaacaataaatggtttgcagccgcgatggcaatgggtaaaccc
tggtccgaaaaactgcacgacgtaaaagaagatgtacaacgtggcttgcagaaacttcat
atgattgaagaagaaaccgggctgaccattgaacaaatgaaagatatcaaccgcaggatg
tccattggtgaagcgaaagcccgtcgtgcaaaaaaagaaatggtggaggcaaacttgcgt
ctggttatttctatcgccaagaaatataccaatcgtggcctacagtttcttgacctgatt
caggaaggaaatatcggtctgatgaaagccgtagataagtttgaatatcgtcgtggttat
aaattttcaacttatgctacctggtggatccgtcaggcgatcactcgttctattgcggat
caagcgcggactatccgtattccggtacatatgattgaaaccatcaataaactcaatcgt
atttcacgccagatgctgcaagaaatgggtcgagaacccactccggaagaactggctgaa
cgtatgctgatgccggaagacaaaatccgcaaagtactgaaaatcgctaaagagccaatt
tcgatggaaacaccgattggtgatgatgaagattcacatcttggggatttcattgaggat
accacgctggaattgccgctggattccgcaacctctgaaagtctgcgttcagcgacacat
gatgtgctggccggcctgacagcccgagaagcgaaagtattgcgcatgcgctttggtatt
gatatgaacaccgaccacacactggaagaagtgggtaaacagtttgatgttacgcgtgaa
cgtatccgacagattgaagcgaaagcactgcgtaaactacgtcatcccagtcgctctgaa
gtactgcgcagttttctagatgattaa
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