Prodigiosinella aquatilis: PCO85_03325
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Entry
PCO85_03325 CDS
T09220
Symbol
dacB
Name
(GenBank) serine-type D-Ala-D-Ala carboxypeptidase
KO
K07259
serine-type D-Ala-D-Ala carboxypeptidase/endopeptidase (penicillin-binding protein 4) [EC:
3.4.16.4
3.4.21.-]
Organism
prod
Prodigiosinella aquatilis
Pathway
prod00550
Peptidoglycan biosynthesis
prod01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
prod00001
]
09100 Metabolism
09107 Glycan biosynthesis and metabolism
00550 Peptidoglycan biosynthesis
PCO85_03325 (dacB)
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
prod01002
]
PCO85_03325 (dacB)
01011 Peptidoglycan biosynthesis and degradation proteins [BR:
prod01011
]
PCO85_03325 (dacB)
Enzymes [BR:
prod01000
]
3. Hydrolases
3.4 Acting on peptide bonds (peptidases)
3.4.16 Serine-type carboxypeptidases
3.4.16.4 serine-type D-Ala-D-Ala carboxypeptidase
PCO85_03325 (dacB)
Peptidases and inhibitors [BR:
prod01002
]
Serine peptidases
Family S13: D-Ala-D-Ala peptidase C family
PCO85_03325 (dacB)
Peptidoglycan biosynthesis and degradation proteins [BR:
prod01011
]
Peptidoglycan biosynthesis and degradation
DD-Carboxypeptidase/DD-Endopeptidase (Low molecular weight PBP)
PCO85_03325 (dacB)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Peptidase_S13
Beta-lactamase2
Transpeptidase
Motif
Other DBs
NCBI-ProteinID:
WJV54504
LinkDB
All DBs
Position
complement(685448..686881)
Genome browser
AA seq
477 aa
AA seq
DB search
MRFSSIVAGLTCAFILHANAAPIENHIQYLPSGANLALIVQKIGASTPVINYHSQQMSLP
ASTQKIITALAALLQLGPDYRFITTMESHGAVTNGVLRGNLIIRFSGDPTLTRQEIRDMV
QNLKKRGIHEISGDVLIDTSIFASHDKAPGWPWNDMTQCFSAPPGAAIVDRNCFSVSLYS
APRPGDNAFIRVASYYPVHIFSEVRTLAKGSPDAKYCELDVVPGELNRFTLTGCLTQRAE
PLPLAFAIQDGASYAGAIVKDELLQAGIRMDGNLRRQTQPNPAGTILAQTQSEPLHELLT
TMLKKSDNMIADTVFRTIGHERFKVPGTWRAGADAVRQILLQKAGIDLNNSIIVDGSGLS
RHDLIAPVTMMQVLQYIAQHDSELNYIKMLPLAGYDGTLRYRAGLHEAGVDGKVSAKTGS
LQGVYNLAGFITTASGQHMAFVQYISGYAVPPKDQKSRRIPLVRFESHLYKDIYQNN
NT seq
1434 nt
NT seq
+upstream
nt +downstream
nt
atgcgtttttcatcgattgttgctggacttacctgtgcttttattctgcatgccaacgct
gctcccatagagaatcatatacaatatttgcctagtggcgccaatctggcgctgattgtg
caaaaaatcggggcatcgacaccagtgattaactaccacagtcagcagatgtcattaccg
gccagtacacaaaaaatcattaccgcactggcggcattgcttcagttaggtcccgattat
cggtttattaccacgatggaaagtcacggcgcagtaaccaacggtgttctaaggggtaat
ctgattatccgtttcagtggagatcctacgttaactcgccaggaaatacgcgatatggtg
caaaatctgaaaaaacgtggaatccacgaaatttctggtgatgtgctgattgatacttcc
atttttgccagtcatgacaaagcaccaggttggccctggaatgatatgacgcaatgcttc
agtgcaccgcctggcgctgccattgttgatcgtaactgcttttctgtttcgctttacagt
gccccccgaccaggtgacaacgcttttattcgcgtagcctcatattatccggtacacata
ttcagtgaagtcagaacgctggctaaaggctctcctgatgcgaaatattgcgaactggat
gtcgtgcccggtgaattaaatcgttttacgctgaccggatgtctgacacagcgagcggaa
ccgctaccgctggcgtttgccattcaggatggcgcaagctatgcaggggccattgtgaaa
gatgagttgctgcaggcaggcatccgcatggacggtaacctacgtcgccaaactcaaccc
aaccccgcaggaaccattctggcccaaacacaatcagaacccctacatgaattactgaca
actatgctcaagaagtcagacaatatgatcgcggatactgtctttcggactattggtcat
gagcgttttaaagtaccgggcacctggcgagctggggctgatgcagtacgtcagatcctg
ctgcaaaaagccggaatcgatttaaataacagtattattgtggatggttccggattatca
cgacatgacctaatagcaccagtcacgatgatgcaggtactgcaatatatcgctcagcat
gatagcgagctgaattatatcaagatgctgccactggcgggatacgatggcacattacgc
tatcgcgctggtttacatgaggctggagttgacggaaaagtttccgcgaaaaccgggtca
ttacaaggcgtctataatctggctgggtttattactaccgccagcggacagcacatggcc
tttgtgcaatacatttccggttatgctgttccgccgaaagatcagaaatcccgacgcatt
cctctcgttcgttttgaaagccatctgtataaagatatctatcaaaacaactaa
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