Prodigiosinella aquatilis: PCO85_03440
Help
Entry
PCO85_03440 CDS
T09220
Name
(GenBank) DEAD/DEAH family ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
prod
Prodigiosinella aquatilis
Pathway
prod03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
prod00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PCO85_03440
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
prod03019
]
PCO85_03440
03009 Ribosome biogenesis [BR:
prod03009
]
PCO85_03440
Enzymes [BR:
prod01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
PCO85_03440
Messenger RNA biogenesis [BR:
prod03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
PCO85_03440
Ribosome biogenesis [BR:
prod03009
]
Prokaryotic type
rRNA helicases
PCO85_03440
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
AAA_22
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
WJV54521
LinkDB
All DBs
Position
711186..713060
Genome browser
AA seq
624 aa
AA seq
DB search
MAEFEISFASLGLSAPIINALSDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAF
ALPLLQNINVDLKAPQMLVLAPTRELAVQVAEACSDFAKHMHGVNVVALYGGQRYDVQLR
ALRQGPQIVVGTPGRLLDHLKRGTLSLSNLSGLVLDEADEMLRMGFIEDVENIMAQIPAE
HQTALFSATMPEAIRRITRRFMKDPQEVRIQSSVTTRPDISQSYWTVHGARKNEALIRFL
EAEDFDAAIIFVRTKNATLEVAEALERSGYNSAALNGDMNQALREQTLERLKDGRLNLLI
ATDVAARGLDVDRISLVVNYDIPMDEESYVHRIGRTGRAGRAGRALLFVENRERRLLRNI
ERTMKLTIPEVELPNAELLGQRRLAKFASKVQQQLESSDLDMYRALLAKLQPQDEFDMET
LAAALLKMAQGERPLILPPDPVVDRRPRREFRDRDESSRGERRRDGRGEARDGERPPRRE
RRDVGDMELYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFATHSTIELPKGMPG
DLLSHFTRTRILNKPMNMQLMGDAQPHERRERGGAGATPARGGRSFSDRPAGAGRPFSGE
RREGGGERRGGGRDGQRAPRRSEA
NT seq
1875 nt
NT seq
+upstream
nt +downstream
nt
atggctgagtttgaaatttcttttgctagcttggggctatccgctccaattattaatgcc
ctgtcagatctgggttacgaaaaaccatcacccattcaggcagaatgtattcctcatctg
ctcaacggccgtgatgtgttgggtatggcacagaccgggagtggtaaaacagcggcattc
gccttgccgttattacagaatattaacgtagatttaaaagcaccgcagatgctggtgctg
gccccaacccgtgagttggcggtgcaggtggctgaagcctgtagtgattttgccaagcat
atgcatggcgtcaacgtagtagcgttatatggcggtcaacgttatgacgtacagctgcgt
gcgttgcgtcaggggcctcagattgtcgtgggtacacccggacgtctgctggatcatctg
aagcgcggtacgctgagtttgtccaatcttagtggattggtactggatgaagctgatgaa
atgctgcgtatgggctttattgaagatgtagaaaacatcatggcgcagatcccggccgag
catcagacggcgctgttctctgcaacgatgccggaagcgatccgtcgcattactcgtcgg
ttcatgaaggatccacaagaagtccgtattcagtccagcgttactactcgcccagacatt
agccagagttactggacggtgcatggtgcgcgcaaaaacgaagcattgatccgtttcctg
gaagcagaagattttgatgcggcgattatttttgtccgtaccaaaaacgcaacgctggaa
gtggcagaagcgctagagcgcagcggttacaatagcgccgcactgaacggtgacatgaat
caggcattgcgtgaacaaacgctggaacgtcttaaagatggtcgcttgaatcttttgatt
gcaacggatgtggcggctcgtggtcttgatgtggatcgtattagtctggtcgtcaactac
gacatcccgatggatgaagaatcttacgttcaccgtattggtcgtactggtcgtgcgggc
cgtgcgggccgtgcgctgttgtttgtagagaatcgtgaacgccgcctgctgcgcaatatt
gagcgcaccatgaagctgactatcccggaagtggaattaccgaatgcagagctgctgggg
cagcgtcgtttggccaagtttgcttctaaagtacaacagcagttggaaagcagtgatctg
gatatgtaccgtgcgctgttggccaagttgcagccgcaggatgagtttgatatggaaacg
ctggctgcggcgttactgaaaatggcgcaaggtgagcgtccgctgattctgccgccggat
ccggtggttgatcgtcgtccacgccgtgaatttcgtgatcgcgatgaatcatcacgtggt
gagcgtcgtcgtgatggccgtggcgaagcacgtgacggggaacgtcctccgcgtcgtgaa
cgccgtgatgtgggtgacatggagttgtaccgcattgaagtgggtcgtgatgatggtgtt
gaagtacgtcacatcgtgggtgccattgctaatgaaggcgatatcagtagccgctacatc
ggtaatatcaagttgtttgctacccattccactattgagctgccgaaaggaatgccgggt
gacctgttgtcgcactttacccgtacacgcatcctgaacaagccaatgaatatgcaactg
atgggtgatgctcagccacatgaacgtcgcgaacgtggtggtgcaggtgcaacaccggct
cgcggtggtcgttcttttagtgatcgccccgcaggcgctggccgtccttttagtggcgaa
cgccgtgaaggtggtggcgaacgtcgcggtggtggccgtgatggtcaacgcgcaccgcgt
cgcagcgaagcataa
DBGET
integrated database retrieval system
