Prodigiosinella aquatilis: PCO85_05875
Help
Entry
PCO85_05875 CDS
T09220
Symbol
recD
Name
(GenBank) exodeoxyribonuclease V subunit alpha
KO
K03581
exodeoxyribonuclease V alpha subunit [EC:
3.1.11.5
]
Organism
prod
Prodigiosinella aquatilis
Pathway
prod03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
prod00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
PCO85_05875 (recD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
prod03400
]
PCO85_05875 (recD)
Enzymes [BR:
prod01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
PCO85_05875 (recD)
DNA repair and recombination proteins [BR:
prod03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
PCO85_05875 (recD)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
AAA_19
RecD_N
AAA_30
UvrD_C_2
NAT10_TcmA_helicase
Viral_helicase1
AAA_11
SH3_13
AAA_22
UvrD-helicase
SLFN-g3_helicase
nSTAND3
AAA_16
Herpes_Helicase
AAA_28
T2SSE
PhoH
MukB
CbiA
DEAD
FtsK_SpoIIIE
UvrD_C
TrwB_AAD_bind
ATPase
DO-GTPase1
Motif
Other DBs
NCBI-ProteinID:
WJV56007
LinkDB
All DBs
Position
1247973..1249826
Genome browser
AA seq
617 aa
AA seq
DB search
MIDLLETAFQRQLLRSLDLQFARMLADDDQPHLLLAAASLSHHAGAGHVCLPLAQLHPRD
FFDGRDPELSQAVWQSVGEPDTAAWHRRLSVCPAVGDGSTATPLVLQHGRLYLQRSWQSE
CRVAQFIASDRHDQPVDEQAVRQVLDSLFGIATSETDWQKIAAAVALTRRITVISGGPGT
GKTTTVARLLAALVQLHHGARLRIQLAAPTGKAAARLTESLGSALGDLLLSAGQQHVFPQ
EATTLHRLLGAVPDSNRLRYHQENPLHLDVLVVDEASMVDLPMMASLIAALPLHARVVFL
GDRDQLASVEAGAVLGDICRSAEQGYSRSRSQQLSRLTGCPLTHTAMETQRSVADSICLL
RKSYRFEQSSGIGQLAQAVNDGDELQVQRVLQQGHADITCQPLSDNQDYQQLLSQAVAGY
RDYLTRIGVGDTPEAILRAFQRYRQLCALREGPFGVSGLNPRIEQALHQAGLIRHSTNPT
SHWYVGRPVMIERNDAVLGLFNGDIGIALLNENNDLRVYFQLPDGSTKSVAPNRLPRHET
AYAMTVHKSQGSEFEHTALALPNHFLPVLTRELVYTAITRARERLSLYTDIPVLCRAVKT
PTLRYSGLAEQIQILMT
NT seq
1854 nt
NT seq
+upstream
nt +downstream
nt
atgattgatctattggaaaccgcttttcagcgccaattactgcgttcgctggatctgcaa
tttgccagaatgctggcagatgatgatcaaccgcatttgctattggcggcggccagtctg
agccatcatgccggggcagggcatgtttgtttaccactggcgcaattgcatccacgtgat
ttttttgatgggcgtgatccagagctgtctcaggccgtatggcaatcggtcggggagcct
gatacagcggcgtggcatcgtcggctgtcagtttgtccagcggtgggcgatggcagtaca
gcaacaccactggtactgcaacacgggcggctttacttgcagcgtagttggcagagtgaa
tgtcgggtggcgcagttcattgccagtgatcgccacgatcagcccgttgatgaacaggct
gtacgtcaggtactggatagtttgtttggcatcgctacatcggaaactgattggcagaaa
attgccgctgcggtggcgctgacacggcgtatcactgtgatttccggtggcccgggaacg
gggaaaaccaccacggtcgccagattgctggcggcgttggttcaactgcatcacggtgca
cgattgcgcattcaattggccgcaccgacaggtaaagcggcggcgcgtttgacagagtca
ttagggtcggcgctgggtgacctgctgctcagtgccggacagcaacacgttttcccgcaa
gaggcgacaacgcttcaccgtttgttgggggccgtaccggatagcaaccggctgcgttac
catcaggaaaatccgttgcacctggatgttctggtggttgatgaagcttccatggtcgac
ttgccaatgatggcgagtttgatagccgccttgccccttcatgcccgtgtcgttttcctt
ggcgaccgtgaccagttggcttctgtggaagccggtgccgtattgggtgatatctgtcgc
tcggccgaacaaggttatagccgcagtcgcagtcagcaattgtcccgacttaccggttgt
ccgctgacacatactgcgatggagacacagcgcagcgtggcagacagcatttgcttgctg
cgtaaaagctatcgctttgagcaatcgtcgggaatcggtcaacttgcccaggcggtgaat
gacggtgatgaactacaggtgcaacgtgtgctgcaacaagggcatgctgatattacctgt
caaccgctgtctgataatcaggattaccagcagttgctgtctcaagctgtcgccggttac
cgtgactacctgacgcgtatcggcgtcggtgatacaccagaagcgatcctgcgggctttc
cagcgttaccgtcaattgtgcgccctgcgtgaagggccgtttggcgtatcgggacttaac
ccgcgaattgagcaagctttacatcaggccggactgatacgacacagtacaaatcccacc
agccactggtatgtgggacggccggtcatgattgaacgtaatgacgcggtactaggattg
tttaatggcgatatcggtatcgcgttgttgaatgagaataacgatttgcgagtctacttt
cagttaccagatggtagtaccaagtccgtggctcccaatcggttgccgcgccatgaaacg
gcttatgccatgacggtacataaatctcagggatccgagtttgagcatacggccctggcg
ttgccgaaccatttcctgccggtattgacccgggaactggtttataccgcgattacccgc
gcccgcgagcgtttatcgctgtatacggacatacctgttttgtgtcgggcagtgaaaacg
ccgactctgcgttacagtggattagccgaacagattcagatattgatgacatga
DBGET
integrated database retrieval system
