Prodigiosinella aquatilis: PCO85_08175
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Entry
PCO85_08175 CDS
T09220
Symbol
uvrB
Name
(GenBank) excinuclease ABC subunit UvrB
KO
K03702
excinuclease ABC subunit B
Organism
prod
Prodigiosinella aquatilis
Pathway
prod03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
prod00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
PCO85_08175 (uvrB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
prod03400
]
PCO85_08175 (uvrB)
DNA repair and recombination proteins [BR:
prod03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
PCO85_08175 (uvrB)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
PCO85_08175 (uvrB)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UvrB_inter
UvrB_3rd
UvrB
Helicase_C
ResIII
UVR
DEAD
SBDS_domain_II
AAA_30
UB2H
AAA_22
PRDA1_C
Motif
Other DBs
NCBI-ProteinID:
WJV55355
LinkDB
All DBs
Position
1756501..1758513
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AA seq
670 aa
AA seq
DB search
MSKVFKLYSDFQPAGDQPEAIHRLEEGLEDGLAHQTLLGVTGSGKTFTIANVVADLNRPT
MVLAPNKTLAAQLYSEMKSFFPDNAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIE
QMRLSATKALLERRDVVVVASVSAIYGLGDPDLYLKMMLHLTQGMLIDQRAILRRLSELQ
YARNDQVFQRGTFRVRGDVIDIFPAESDEVALRIELFDEEVERLSLFDSLTGQIMQNVPR
YTIYPKTHYVTPRERILQAMEDIKVELVDRRKVLLENNKLVEEQRLSQRTQFDLEMMNEL
GYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVIDESHVTIPQLGGMYRGDRARKET
LVEYGFRLPSALDNRPMRFEEFESLAPQTIYVSATPGKYELEKSGGEVIDQVVRPTGLLD
PEIEIRPVTTQVDDLLSEIHKRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDI
DTVERVEIIRDLRLGEFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIG
RAARNLKGRAILYADKITPSMERAISETQRRREKQREYNEKHGITPQGLNKKVGDILQIG
QSAHGRGKGRSRKAAEPVAEYQLLTPKALEHKIHELESKMMMHAQNLEFEEAAQLRDQVH
ALREQFIAVS
NT seq
2013 nt
NT seq
+upstream
nt +downstream
nt
atgagcaaagtatttaaactgtattcggattttcaacccgcaggcgatcaacctgaggct
attcaccggttggaggaagggctggaggatgggttggcgcatcagaccttgttgggggta
acggggtccggtaagacgttcactattgccaacgtggttgcggatctcaaccgcccgacg
atggtgctggcgccgaacaagacgttggcggcccagctttatagtgaaatgaaatcgttt
ttcccggacaacgccgtggaatatttcgtttcttattatgattactatcaacccgaagcc
tatgtcccgagttcggataccttcattgagaaagacgcttcggtcaacgaacatattgaa
cagatgcggctatccgctaccaaagcgttgctggaacggcgcgatgttgtcgtggtggca
tcggtatcagcgatttatggtctgggtgatccagatctttatctgaagatgatgctacat
ctgactcaaggtatgttgattgaccagcgagccattttgcgtcggttgtccgaattgcag
tacgcccgtaatgatcaggtttttcagcgcggcacgtttcgtgtccggggcgatgttatc
gatattttcccggctgaatcggatgaagttgcgctgcgcatcgaactatttgatgaagaa
gtggagcggttgtcgctgtttgattcactcaccgggcagatcatgcaaaatgtgccacgc
tacaccatttatcccaagacacattatgtgacgccgcgcgaacgtattctgcaagcgatg
gaagatataaaggttgagctggttgaccgtcgtaaggtgttgctggaaaacaataaattg
gtagaagagcaacgtctgagccagcgaacccaatttgatctggagatgatgaatgaactg
ggttattgctcagggattgaaaactactcacgcttcctctctggtcgcggtccgggcgag
ccgcctcctaccttatttgactatctgccagccgatggtttgttggtcattgacgaatca
cacgtgaccattccgcaactggggggaatgtaccgtggcgatcgggcgcgtaaagagaca
ctggtggagtacggttttcgtctgccgtcggcgttggataaccggccgatgcggtttgag
gagtttgagtcgctggcgccgcaaaccatctacgtttcggcgacgccaggtaagtacgag
ctggaaaaatccggtggtgaggtgatcgatcaagtcgtgcgtcctactggtttgttggat
ccggaaattgaaatccgaccagtaacgacgcaggtggatgacctgttgtcggaaatccat
aaacgcgccgccattaatgagcgggtgctggtcaccacactgaccaaacgcatggcggag
gatttgactgagtatctggaagagcatggcgaacgggtgcgctatcttcactctgatatc
gacacggttgaacgggtggaaatcatccgggatctgcgattgggtgagtttgatgtgcta
gtggggattaacctgttgcgggaaggactggatatcccggaagtatctctggtggcaatc
ctggatgccgataaggagggtttcctgcgctccgagcgttcactgattcagaccattggc
cgtgctgcccgtaatcttaaggggcgagctattctttacgcggataaaatcacgccgtcg
atggagagggcgattagtgaaacgcagcgccgccgcgaaaaacagcgggaatataatgaa
aaacatggcattaccccacagggtcttaataagaaagttggcgatatattgcagattggt
cagtctgcacacggtagaggtaaaggtcgcagcaggaaagcggctgaaccggtagccgag
tatcagctactgacgccgaaagcgctggagcataaaatccacgaactggaaagtaagatg
atgatgcatgcgcaaaacctggaatttgaagaggcggcacaattgcgtgatcaggttcat
gcattacgggaacaatttatcgcagtgtcctga
DBGET
integrated database retrieval system
