Prodigiosinella aquatilis: PCO85_08240
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Entry
PCO85_08240 CDS
T09220
Symbol
rhlE
Name
(GenBank) ATP-dependent RNA helicase RhlE
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
prod
Prodigiosinella aquatilis
Pathway
prod03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
prod00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PCO85_08240 (rhlE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
prod03019
]
PCO85_08240 (rhlE)
Enzymes [BR:
prod01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
PCO85_08240 (rhlE)
Messenger RNA biogenesis [BR:
prod03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
PCO85_08240 (rhlE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
HI1480
P-loop_SecA
HEM4
Motif
Other DBs
NCBI-ProteinID:
WJV55367
LinkDB
All DBs
Position
1770552..1771916
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AA seq
454 aa
AA seq
DB search
MSFESLSLSADILRAVEEQGYREPTPIQRQAIPIVLAGRDLMASAQTGTGKTAGFTLPLL
QLLSTKPAPKGRRPVRALILTPTRELAAQIGENVLAYSKYLHLRSLVVFGGVSINPQMMK
LRGGVDILIATPGRLLDLEHQNAVDLSQVEILVLDEADRMLDMGFIHDIRRVLAKLPAKR
QNLLFSATFSNEIRTLASKWLTNPASVEVARRNTPSELVAQHVHFVDKKRKRELLSYLIG
KHNWQQVLVFTRTKHGANHLAELLNKDGITATAIHGNKSQGARTRALANFKDGGIRVLVA
TDIAARGLDIDQLPHVVNYELPNVPEDYVHRIGRTGRAEATGEALSLVCVDEHKLLRDIE
RLLNREIPRIAIDGYEPDPTIKADPIQNGRQGGRDSRASAPRSQGDRQGPRGQGDYSRSA
RKPATSRPAGAGQRQQDGQPRRSPRPQQKSSAKA
NT seq
1365 nt
NT seq
+upstream
nt +downstream
nt
atgtcttttgaatctctcagcctgagcgctgatattttgcgtgctgtggaagagcagggt
taccgcgaaccgacaccgatacagcgtcaggcaatcccgattgtgctggcaggccgtgac
ctgatggccagcgcacagaccggcacgggtaaaaccgcaggttttacgctgcccttgttg
caattactcagcactaaacccgctcccaaagggcgtcgtccggtacgggcgctgatcctg
actccaacccgtgaactggcagcacagatcggtgaaaacgttctggcgtatagcaaatat
ctacatcttcgttcactggtggttttcggcggtgtcagcattaatccacagatgatgaag
ctgcgcggcggcgtcgatattctgatcgccacgccgggacgattgctggatctggagcac
cagaacgcggttgatttgtcacaggtggaaatcctggtgttggatgaagccgaccggatg
ctggatatgggctttattcacgatatacgccgtgtactggcaaaattgccggccaaacgt
cagaacctgctgttttctgcaacgttctcgaatgaaataagaacactggccagtaaatgg
ttaacgaacccggcatcagtggaagtggcgcgtcgcaatacgccgtctgaactggtggcg
cagcatgtgcattttgttgataagaaacgcaaacgggaattgctttcctatttgattggc
aaacacaactggcagcaggtactggtttttacccgtaccaaacacggtgctaaccatttg
gccgagttgttgaataaagatggtattaccgccacggccattcacggtaataaaagtcag
ggcgctcgtacccgggcgttggcaaatttcaaagatggtggcatccgcgtactggttgct
acggatattgccgctcgtgggctggacatcgaccagttaccccatgtggtgaactatgag
ttaccgaatgtgccggaagattatgtccatcgtattggtcgtaccgggcgggcggaagcc
actggtgaggcactgtcactggtgtgtgtggatgagcacaagttgctacgggatattgag
cgtctgttgaatcgtgaaattccccgtatagcgattgacggttatgaaccggacccgacg
attaaagccgacccgatccagaatggccgtcaaggtggtcgtgatagtcgtgccagcgca
ccgcgtagccagggtgatcgccagggaccgcgcgggcagggcgattattcccgttcggcg
cgtaaacccgcgacgtctcgaccagcaggagccggtcagcgccagcaggatggacaaccg
cgtcgttcaccgcgtccgcaacagaaatcttcagcaaaagcttag
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