Prodigiosinella aquatilis: PCO85_08815
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Entry
PCO85_08815 CDS
T09220
Symbol
nfo
Name
(GenBank) deoxyribonuclease IV
KO
K01151
deoxyribonuclease IV [EC:
3.1.21.2
]
Organism
prod
Prodigiosinella aquatilis
Pathway
prod03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
prod00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
PCO85_08815 (nfo)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
prod03400
]
PCO85_08815 (nfo)
Enzymes [BR:
prod01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.21 Endodeoxyribonucleases producing 5'-phosphomonoesters
3.1.21.2 deoxyribonuclease IV
PCO85_08815 (nfo)
DNA repair and recombination proteins [BR:
prod03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
AP endonucleases
PCO85_08815 (nfo)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AP_endonuc_2
Motif
Other DBs
NCBI-ProteinID:
WJV55472
LinkDB
All DBs
Position
complement(1886818..1887666)
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AA seq
282 aa
AA seq
DB search
MKYVGAHVSASGGVDQAVIRAHELNATAFALFTKNQRQWQAAPLTPEIIGQFKAACVQYG
YTSAQILPHDSYLINLGHPDDEALQKSRIAFIDEMHRCQQLGLTMLNFHPGSHLRQITER
QCLARIAESINIALEAIQGVTAVIENTAGQGSNLGFRFEQLAEIIHQVEDKSRVGVCIDT
CHAFAGGYDLRTEADCDHTFAELENVVGFTYLKGMHLNDAKSEFGSRVDRHHSLGEGNIG
KTVFSYIMRDPRFDGIPLILETINSAIWAEEIAWLKSQQSGN
NT seq
849 nt
NT seq
+upstream
nt +downstream
nt
atgaaatatgtcggtgctcatgtcagtgcatccggtggtgtcgaccaggcggtaatccgc
gcccatgaacttaatgccacggcgtttgcgctgtttacaaaaaatcagcgccaatggcag
gcggcaccgcttacaccggagattatcgggcagttcaaggccgcctgtgtccagtatggc
tatacatccgcgcaaatacttcctcacgacagttatttgattaacctaggtcatccggat
gatgaagcactgcaaaaatcccgtatcgcatttattgatgaaatgcaccgttgccagcaa
ctgggactgacgatgctcaattttcatcccggtagccatttacgccagataacggagcgt
cagtgtctggcgcggattgcggaatccatcaacattgccctcgaagcaatccagggtgtc
accgccgtgatcgaaaataccgccggtcagggcagtaacctgggatttcgttttgaacag
ctggcggaaattatccaccaggttgaagacaaaagccgggtaggtgtctgtattgatacc
tgccacgcatttgcgggtggttatgatctgcgcaccgaggccgattgtgaccatacgttt
gccgaactggaaaacgtagtgggcttcacatacttgaaagggatgcatctcaatgatgcc
aaaagcgagttcggtagtcgggttgaccgccatcatagtctgggagagggcaacattggc
aaaacggtgttcagctatatcatgcgtgatcctcgttttgatggcattccactcattctt
gaaactatcaattccgctatctgggcagaagagatcgcctggctgaaatctcagcagtcc
ggcaactga
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