Prodigiosinella aquatilis: PCO85_10825
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Entry
PCO85_10825 CDS
T09220
Symbol
topA
Name
(GenBank) type I DNA topoisomerase
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
prod
Prodigiosinella aquatilis
Brite
KEGG Orthology (KO) [BR:
prod00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
prod03032
]
PCO85_10825 (topA)
03400 DNA repair and recombination proteins [BR:
prod03400
]
PCO85_10825 (topA)
Enzymes [BR:
prod01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
PCO85_10825 (topA)
DNA replication proteins [BR:
prod03032
]
Prokaryotic type
DNA Topoisomerases
PCO85_10825 (topA)
DNA repair and recombination proteins [BR:
prod03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
PCO85_10825 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Zn_Ribbon_Topo
Zn_ribbon_bTOP1
Toprim
Zn_ribbon_Top1
Zn_ribbon_recom
E217_gp28
Toprim_4
Toprim_2
Zn_ribbon_IS1595
DUF7351
Motif
Other DBs
NCBI-ProteinID:
WJV55832
LinkDB
All DBs
Position
2305620..2308217
Genome browser
AA seq
865 aa
AA seq
DB search
MGKALVIVESPAKAKTINKYLGNDYVVKSSVGHVRDLPTSGSGSKKSSDSTNGKTKKAVK
KDEKSALVNRMGVDPYHGWDANYEILPGKEKVVSELKTLAEQADHVYLATDLDREGEAIA
WHLREIIGGDEKRFSRVVFNEITKNAIQQAFKNPGELNIDRVNAQQARRFMDRVVGYMVS
PLLWKKIARGLSAGRVQSVAVRLVVDREREIKAFVPEEYWELHAEMQTAHDVMLQMQVTH
HNGKPFKPVNQVQTQSAVSLLEKARYVVAEREDKPTSSKPGAPFITSTLQQAASTRLGFG
VKKTMMMAQRLYEAGYITYMRTDSTNLSQDALNMVRGYISDEFGQRYLPESPNFYSSKEN
SQEAHEAIRPSDVKVLSEQLKDMEADAQKLYQLIWRQFLACQMTPAQYDSTTLVVKADDY
QLRAKGRTLRFDGWTKVIPALRKGDEDRTLPSVEVGETLTLEKLLPSQHFTKPSARYSEA
SLVKELEKRGIGRPSTYASIISTIQDRGYVRVENRRFYAEKMGEIVTDRLEDNFRELMSY
DFTARMESSLDQVANNQAAWKAVLDEFFAEFSQQLETAEQEPEAGGMRPNLMVLTSIDCP
TCGRKMGIRTASTGVFLGCSGYALPPKERCKTTINLIPEAEVLNILEGDEAETNALRARR
RCPKCGTAMDSYLIDNQRKLHVCGNNPSCDGYEIENGEFRLKGYDGPVVECEKCGSEMHL
KMGRFGKYMACTNESCGNTRKILRSGEVAPPKEDPVPLPELACEKSDAYFVLRDGAAGVF
LAANTFPKSRETRAPLVEELLRFKDRLPEKLRYLADAPITDNDGNKTLVRFSRKTKQQYV
SSEKEGKATGWSAFYVDGKWVETKK
NT seq
2598 nt
NT seq
+upstream
nt +downstream
nt
atgggtaaagctctcgtcatagttgagtccccggcaaaagccaaaacgatcaataaatat
ctaggcaatgactacgtggtgaaatccagcgtcggtcatgtgcgcgatttgccaaccagt
ggctctggtagtaagaagagttcggactcaaccaacggcaaaactaaaaaagccgtcaaa
aaagatgaaaaatcggcgctggtcaaccgaatgggggtcgatccttatcacggttgggat
gcgaattatgaaatcctgccgggcaaggaaaaggtcgtctctgagctgaagacattggca
gaacaagcagaccatgtttatctcgctaccgaccttgaccgcgaaggggaagccattgcg
tggcacctgcgggaaataatcggtggggatgagaaacggttcagtcgtgtggtgttcaac
gaaatcaccaaaaatgcgatccagcaggcatttaaaaaccctggtgagttgaacatcgat
cgtgttaatgcccaacaggcccgtcgctttatggatcgggtcgtaggctacatggtatcg
cctttgctatggaagaaaattgcccgagggttatcggcggggcgtgtgcagtccgtggct
gtgcgtttggtggtggatcgtgagcgagaaataaaggcgtttgtcccagaagaatactgg
gaacttcacgccgagatgcaaacggcccatgacgtcatgctgcaaatgcaggtaacgcac
cataacggaaaaccgtttaagccagtcaatcaggtccagacgcagtcagccgtcagtttg
ttggaaaaagcccgttatgtcgtggctgagcgtgaagataaaccgaccagtagtaagcct
ggcgctccttttattacatcgacgcttcagcaggcagccagtacccgtttgggcttcggc
gtcaagaaaaccatgatgatggcccagcgcttatatgaagcgggttatatcacctacatg
cgtactgactcgactaacctgagtcaggatgcgttgaatatggtgcgcggatatatcagc
gacgaattcggtcagcgttatttgcctgagtcgcctaatttttacagcagtaaagagaat
tcgcaggaagctcatgaagcaatccgtccttcagatgtcaaggttttgtctgaacaactg
aaagatatggaagcggatgcccagaaattgtatcagctgatctggcgtcagtttttggcc
tgtcagatgacgcctgcacagtacgactccaccacgctggtggtgaaagccgatgattac
cagctccgtgccaaaggccgtactttgcgttttgatggctggaccaaagtgattccggcg
ttacgcaaaggtgatgaagatcgtacattgccatccgttgaggtgggcgaaacactgaca
ttagaaaaactgttaccaagccagcactttactaagccatctgcgcgttacagtgaagcg
tctttggtgaaggaattggaaaaacgtggcattggccgtccttccacttatgcatcaata
atctccaccattcaggatcgtggttatgtacgggttgaaaaccgtcgtttctatgccgaa
aaaatgggggaaattgttactgaccgcttggaagataattttcgcgagctgatgagctat
gattttactgctcgcatggagagtagcttagaccaggtcgcgaacaatcaggcggcatgg
aaagccgtgttggacgagtttttcgccgagttcagccagcaactggaaaccgctgagcag
gaaccggaagcggggggaatgcggcctaatctgatggtgctgaccagcatcgattgcccg
acttgtggtcgcaagatggggattcgtaccgccagtacgggcgtttttctggggtgctca
ggttacgctctaccgccgaaagaacgctgcaaaaccaccatcaacctgattccagaagcc
gaagtgctgaacatactggaaggtgatgaagccgaaaccaatgcactgcgtgctcgccgt
cgttgtccgaaatgtggcactgctatggatagttatctgatcgacaatcagcgtaagctg
catgtctgcggtaataatccatcctgtgatggctatgaaatagaaaacggcgagtttcgt
ctcaaaggctatgacggcccagtggtggagtgtgagaagtgtggttcggaaatgcacctg
aagatggggcgttttggtaagtatatggcgtgtactaatgagagctgcggtaatacccgc
aagattttgcgcagtggtgaggttgctcctccgaaggaagatcctgtaccgctacctgaa
ttggcttgtgaaaaatctgatgcttattttgtactacgtgatggtgctgcgggtgttttt
ctggccgccaatacgttcccgaaatctcgtgagacgcgggcaccattggtcgaagagctg
ttgcgtttcaaagatcggttgccggagaaactgcgttatctggctgatgctccgataacg
gataacgatgggaataaaacattggtccgctttagccgtaagaccaaacaacagtatgtt
tcctcagagaaagagggtaaggctactggatggtcagcattttatgtagacggaaaatgg
gttgagacaaagaaatag
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