Prodigiosinella aquatilis: PCO85_12160
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Entry
PCO85_12160 CDS
T09220
Name
(GenBank) exoribonuclease II
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
prod
Prodigiosinella aquatilis
Brite
KEGG Orthology (KO) [BR:
prod00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
prod03016
]
PCO85_12160
Enzymes [BR:
prod01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
PCO85_12160
Transfer RNA biogenesis [BR:
prod03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
PCO85_12160
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
OB_RNB
S1
CSD2
S1CSD-TOTE-2
Rho_RNA_bind
Motif
Other DBs
NCBI-ProteinID:
WJV52019
LinkDB
All DBs
Position
2615333..2617264
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AA seq
643 aa
AA seq
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MFQDNPLLAQLKQQLHSQTPRVEGVVKATDKGFGFLEADAQKSYFIPPPQMKKVMHGDRI
VATVHTEKERESVEPESLVEPFLTRFVGRVQKKDDRLAIIPDHPLLKESISCHTAHALTH
DFQEGDWAVAEMRRHPLKGDRNFHAELTQYITNSEDPLVPWWVTLSRHDLERTAPEADTA
ALDDGDLQREDLTALDFVTIDSASTEDMDDALFVQDNDDGSLQLTVAIADPTAYVPAGSE
LDAIARHRAFTNYLPGFNIPMLPRHLSDDICSLRPGERRPVLACRMTIAADGTLDDMHFF
AAWIESKAKLAYDSVSDWLEQQGDWQPASETIAHQLRLLQRVCLARSHWRTTHALVFKDH
PDYRFLLGDKGEVLDIVVEHRRIANRIVEEAMIAANVCAAQVLRDKLGFGIYNVHNGFDP
SKVEQAVTVLGNNGIHADAQHLLTLEGFCTLRRELDTQPTQFLDSRIRRFQSFAEVSTTP
GPHFGLGLEAYATWTSPIRKYGDMVNHRLLKAIISGQPTEKPQDDVTVKLSERRRLNRMA
ERDVSDWLYARFLKEKAGTDVRFLAEIMDVTRGGLRVRLLDNGASAFIPASFIHAVRDEL
VCSQETGTVTVKGETVYRQSDTLEVTIAEVRLDTRNIIAKPAA
NT seq
1932 nt
NT seq
+upstream
nt +downstream
nt
atgtttcaagataatccgctgcttgctcagcttaaacagcaactccattcccaaacgcca
cgggtagaaggcgtcgttaaagctaccgataagggattcggctttcttgaagccgacgct
caaaagagttacttcattccgccaccgcaaatgaagaaagtcatgcacggtgaccgtatt
gtcgccacagtgcatacggaaaaagagcgagaaagcgtcgaaccggaatcgttagttgag
ccgttcctgacccgttttgtcgggcgtgttcagaagaaagacgatcgtctggctattatt
cctgatcatcctttactgaaagaatccatctcttgccacaccgcacacgcgttgacgcat
gactttcaagagggtgactgggctgtagcggaaatgcgccggcacccgctgaaaggtgat
cgcaacttccacgctgaactaacgcagtacattactaacagtgaggatcctctggttcca
tggtgggtgacattgtcacgtcacgatctggagcgtactgcgcccgaggccgatactgcc
gcactggatgatggggatttgcagcgagaagacttaaccgcgctggattttgtcactatc
gacagtgccagtacggaagatatggacgatgccttgttcgtacaggataacgatgatggt
tcactgcaactgacggtagctattgccgaccctaccgcctatgtccctgctggcagtgaa
ctggatgcaattgcgcgtcatcgcgcgtttaccaattatttgcccggtttcaatatccca
atgctcccgcgccatttatcggatgatatctgttcactacggccgggagaacgtcgtccg
gtactggcatgccgcatgactatcgccgccgatggaacgctggatgatatgcacttcttc
gcagcctggattgagtccaaagccaagctggcctacgacagtgtttctgattggctggaa
caacaaggtgactggcaacctgccagcgagacaattgcccatcagctccgtctgctacag
cgcgtatgcctggcccgcagtcactggcgcacgacacatgctctggtattcaaagatcac
ccagactaccgcttcttgttgggagacaaaggtgaagtgctggatatcgtggtagaacac
cgtcgtattgccaaccgtattgtggaagaagcgatgattgccgctaacgtttgtgcggcg
caggttctacgtgacaagcttggttttggtatttacaacgtacataacggctttgatccg
tccaaggtggaacaagcggtcaccgtgctggggaataatggtattcatgccgatgcgcaa
catctgctgacattggagggtttttgtacgttgcgccgtgaactggatactcagccaaca
caattccttgacagtcgtatccgtcgttttcagtcatttgcggaagtcagcactacgcct
gggccacattttggccttggtctggaagcttatgccacctggacttcgccaatccgtaag
tacggagatatggtgaatcatcgcctgctgaaagcaattattagtggtcagccgacagaa
aaaccacaggatgacgttactgtgaagttgtcagaacgccgtcgtttgaatcgtatggct
gaacgtgatgtcagtgactggctgtatgcccgtttcttaaaagaaaaagcaggcactgac
gtgcgttttctggcagaaattatggacgtaactcgcggtggtctgcgtgttcgtttattg
gataacggtgcctcggcatttattcccgcatcatttattcatgcggtacgtgatgaactg
gtatgcagccaggaaaccggtaccgtgacggtgaaaggtgaaacggtatatcgccaaagt
gatacactggaagtgaccattgctgaagttcgtttggatactcgtaacattatcgccaaa
ccggcagcttaa
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