Prodigiosinella aquatilis: PCO85_18490
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Entry
PCO85_18490 CDS
T09220
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
prod
Prodigiosinella aquatilis
Pathway
prod03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
prod00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PCO85_18490 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
prod03019
]
PCO85_18490 (rnr)
03016 Transfer RNA biogenesis [BR:
prod03016
]
PCO85_18490 (rnr)
Enzymes [BR:
prod01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
PCO85_18490 (rnr)
Messenger RNA biogenesis [BR:
prod03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
PCO85_18490 (rnr)
Transfer RNA biogenesis [BR:
prod03016
]
Prokaryotic type
tRNA degradation factors
PCO85_18490 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
WHD_RNase_R
S1
Rho_RNA_bind
Motif
Other DBs
NCBI-ProteinID:
WJV53149
LinkDB
All DBs
Position
complement(3966496..3968949)
Genome browser
AA seq
817 aa
AA seq
DB search
MSKDPFLEREAEKYESPIPSREYILAHIAKRDTPISREELATDLALTTDEQLEALRRRLR
AMERDGQLVFTRRQCYALPEKLDLLRGKVIGHRDGYGFLRVEGRKDDLYLSAEQMKIAIH
GDVVLAQPLGEDRKGRREGRIVRILEPRTGQIVGRYFVDAGTGFVVPDDSRLCFDILIPP
EFIGGARMGFVVVVELTQRATRRTKAVGKIVEILGDNMGTGLAVDIALRTNEIPHTWPPK
VEEQVRDLAEEVPENAKKGRVDLRELPLVTIDGEDARDFDDAVFCEKKRGGGWRLWVAIA
DVSYYVRPNTPLDNEAHARGTSVYFPSQVVPMLPEVLSNGLCSLNPQVDRLCMVCEMTVS
EQGKLTSYKFYEAVMSSHARLTYTKVWHILQGDEELRAQYHSLVTPLEELHRLYKVLEHA
RDVRGGIAFETEEAKFIFNAERRIERVEAVVRNDAHKLIEECMILANISAARFVEKNEEP
ALFRVHDQPSEDHVLALRSVLGELGLTLKGGMKPQPKDYAELMNEVAERPDHEMLQTMLL
RSMKQAVYDPENRGHFGLALTSYAHFTSPIRRYPDLSLHRAIKYLLGARKERWTPTGGWH
SDFQEMLQLGQHCSMTERRADEATRYVSDWLKCDFMQDHVGSVFTGIIASVTGFGFFVRL
NDLFIDGLVHVSTLDNDYYRYDNVGQRLIGESRGQVYRLGDEVEIRVEAVHMDERNIDFA
LVSSTRKVRGEGKTARERTRKSNDREEKPTRRRRVSPRTNFEPDKAFRNEGERKGKTVAK
STDKPKKKTDKAKKNVEKTRKIAAATKAKRANKKTAE
NT seq
2454 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaaagatccatttttggaacgagaagcagagaaatacgaatccccaattcccagt
cgtgaatatattctggcgcacattgccaagcgggatacgccaatcagccgtgaggagttg
gcaactgatctggcattaactaccgatgaacagcttgaagcgttacgccgccgcttgcgg
gccatggaacgtgatgggcagttggtctttacccgtcgccagtgctatgcgctgccggaa
aaactggatctgctgcgcggtaaggttattggtcaccgcgatggttatggttttctgcgg
gtggaaggtcgcaaggacgatctctacttatcggcagagcaaatgaaaattgccattcat
ggcgatgtcgtattagcccaaccgttgggtgaagaccgtaaggggcgccgagaagggcgt
attgtccgtattcttgaacctcgtaccgggcagattgttggccgctattttgttgacgct
ggtactggttttgtcgtgccggacgacagtcgcctgtgtttcgatatcctgatcccgccg
gaatttattggcggtgcgcggatggggttcgtggtggttgtagagctgactcagcgtgct
acacgccgcaccaaggcggtagggaaaatcgtcgagatcctcggagacaacatgggcacc
gggctggcggtagacattgccctgcgcaccaacgaaataccgcatacctggccacctaaa
gtagaagagcaagtacgtgatcttgctgaagaggtgccggaaaatgccaagaaaggtcgg
gtggatctccgtgaactaccactggtaacaattgatggtgaagatgcccgtgattttgat
gacgccgttttctgcgagaaaaaacgtggtggcggttggcgtttgtgggtcgctattgct
gatgtcagttattatgtccggcctaataccccgttggataacgaggctcacgcccgcggc
acgtcggtttactttccttcccaagttgttcccatgctgccggaagtgctctccaatgga
ctgtgctcgctgaatccacaggtagatcgtctgtgtatggtgtgcgaaatgacggtctca
gagcaaggtaaactcacgtcttacaaattctacgaagcggtgatgagttcccacgcccgt
ctcacctataccaaggtgtggcatattttgcagggcgatgaagagttgcgcgcccagtat
cattcactggtgacgccgctggaagaactgcaccgtttatataaggtgttggaacatgcc
cgggatgtccgcggcggtattgcgttcgaaacggaagaagccaagtttatttttaacgcc
gaacgccggattgagcgggtcgaggcagtggtgcgtaacgatgcgcataaactgattgaa
gagtgcatgattctggcgaatatctcggcagccagatttgtggagaaaaacgaagagccg
gcattatttcgtgtgcatgatcagccgagtgaagatcatgtcctggcgttgcgcagtgtg
ctgggagagctggggctgacattaaaaggcggcatgaaaccgcagccgaaagattacgcc
gagttgatgaacgaggtcgccgaacgccccgatcatgaaatgttgcaaaccatgctgctg
cgctcaatgaagcaggcggtgtacgatccggaaaaccgcggacactttggtctggcgttg
acgtcgtatgcgcatttcacttcgccgattcgtcgttatcctgatctttcactgcatcgt
gcaattaaatatctgcttggtgcacgtaaggaacgttggactccaaccggaggctggcac
agtgacttccaggaaatgctacaactgggccaacactgttcgatgactgaacgccgtgcg
gatgaagccactcgttatgtatcggactggctgaaatgtgatttcatgcaggatcatgta
ggtagcgtctttaccggtattattgccagtgtgacgggttttggtttctttgttcgcctg
aacgatcttttcatcgacggcctggtgcatgtctccacgctggataacgattactatcgt
tatgataacgttggtcagcgtttgatcggtgaatcccgtggccaggtttatcggctgggc
gatgaagtggaaatccgtgtggaagcggtacatatggatgaacgcaatatcgattttgca
ctggtttccagtacccggaaagtgcggggagaagggaaaaccgcccgtgagcgcaccagg
aaaagcaatgatcgggaagaaaaacctacccgtcgtcgtcgggtaagcccgcgtaccaat
tttgagccggataaggcgttccgtaatgaaggagaacggaagggcaaaaccgtggccaag
tcgacagacaagccgaaaaagaaaacggacaaagccaaaaagaacgtggaaaaaacacgt
aaaattgcggccgcgaccaaagcaaagcgggcaaacaaaaaaaccgcagagtga
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