Prodigiosinella aquatilis: PCO85_19565
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Entry
PCO85_19565 CDS
T09220
Symbol
rapA
Name
(GenBank) RNA polymerase-associated protein RapA
KO
K03580
ATP-dependent helicase HepA [EC:5.6.2.-]
Organism
prod
Prodigiosinella aquatilis
Brite
KEGG Orthology (KO) [BR:
prod00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
prod03021
]
PCO85_19565 (rapA)
Transcription machinery [BR:
prod03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
RNA polymerase-associated proteins
PCO85_19565 (rapA)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RapA_C
Tudor_1_RapA
Tudor_RapA
Helicase_C
SNF2-rel_dom
ResIII
DEAD
Cas3-like_C_2
AAA_34
NUP120_helical_2
Motif
Other DBs
NCBI-ProteinID:
WJV53333
LinkDB
All DBs
Position
4193346..4196249
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AA seq
967 aa
AA seq
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MPFTLGQRWISDTESELGLGTVVAVDARMVTLIFPASGENRLYSRSDAPITRVMFNPGDT
ITGHEGWQLRIDDIRDENGLRTYVGRRLDDDTPAELREVFLDSKLTFNKPQDRLFAGQID
RMDRFALRYRARNHQHEQALQPWGGLRGMRASLIPHQLHIAREVGQRHAPRVLLADEVGL
GKTIEAGMIIHQQLLAGRAERVLIVVPETLQHQWLVEMLRRFNLLFSLFDDERYAEARLD
SDNPFETEQLIICSLGFIQRNATRFGQLLHAHWDLLVVDEAHHLVWSEAAPSPEYQAIEH
LASATPAVLLLTATPEQLGQESHFARLRLLDPNRFHDYHEFIAEQQQYRPVADAVTLLLA
GNKASSAELNALSELLGEQDIEPLLKSINSDSEDREQARHELITMLMDRHGTSRVLFRNT
RQGVKGFPQRVLHQIKLPLPSQYQTAIKVSNIMNAGKTPESRARDMLYPEQIYQKFEDEN
ATWWSFDPRVEWLLNYLTTHRDKKVLVICAQAATALQLEQVLRTREAIRAAVFHEGLSIL
ERDRAAAYFASEEEGAQVLICSEIGSEGRNFQFASHLVMFDLPFNPDLLEQRIGRLDRIG
QTQEIQILVPYLENTAQALLVRWYHEGLDAFEHTCPTGRTIYDSHYEQLITRLTTPGERE
GLEEFISACRQQHEALKQQLEQGRDRLLEMHSNGGEQAQELCQAIAEQDNDVNLVNFALN
LFDIIGIHQEDRSDNMIILTPSDHMLVPDFPGLPQDGCTITFDREQALSREDAQFISWEH
PLIRNGLDLILSGETGSCAVSLLKNKALPVGTLLAELVYVVEAQAPKKLQLTRFLPPTPV
RLLMDRKGTNLAAQVEFESFNRQLNAVNRHTSSKLVNAVQAEVHDMLQKAEPLVEVHARQ
LITDAQHNADQQLRRELERLEALKAVNPNIRDDELQALETQREQVLSNLQQANWRLDAIR
LVVVSHQ
NT seq
2904 nt
NT seq
+upstream
nt +downstream
nt
atgccttttacacttggtcaacgctggatcagcgatacagaaagcgaactgggattggga
accgtagtggcagtagatgcccggatggttaccctgatcttccctgccagcggtgagaac
cgcctctattccagaagtgatgctccgatcacccgcgtgatgttcaaccctggtgatacc
atcaccggccatgagggctggcaactgcggatagacgatatccgcgatgaaaatggtctg
cgtacctatgtgggtcgtcgcctggatgatgatacgcctgccgaattgcgggaagttttt
cttgatagcaaactcacattcaacaaaccacaggatcgcctgttcgccggacaaatcgat
cgtatggatcgctttgcattgcgttaccgcgcccgtaatcatcagcatgagcaggcgctg
caaccctggggtggtctacgcgggatgcgtgccagcctgattcctcatcagttgcatatt
gcccgtgaagtaggacagcgtcatgctccacgcgtactactggcggacgaagttggtctg
ggaaaaactatcgaagccggtatgatcattcaccaacaactgttagcaggccgggctgaa
cgcgtacttattgtggtaccggaaacgctgcaacatcagtggctggtagaaatgctccgc
cgcttcaatctactgttttcactgtttgacgatgaacgctatgccgaagccaggctggat
agcgacaacccctttgaaacagagcaattgattatttgttcgctgggttttatacagcgc
aatgccacacggtttgggcaactactgcatgcccattgggacttgctggttgtggatgaa
gcccaccatctggtctggagcgaggcggcacccagcccggaataccaagcgattgagcat
ctggccagcgctactccggcggtattattgctaacggcgacaccggaacagctaggtcag
gagagccactttgctcgtctacgactgctggatccaaaccggtttcacgactatcacgaa
tttatcgccgagcaacagcaatatcgcccggtggccgatgccgtcactctactattggcc
ggtaacaaagccagttccgccgaactgaacgctttgagtgagttactgggcgagcaagac
attgaacccttactgaaatccatcaacagcgatagcgaagatcgggaacaggcccgccac
gaactgatcacgatgctgatggatcgtcacggcaccagccgcgtactgttccgcaacact
cgtcagggagtaaagggctttccacagcgggtgctgcaccagattaaacttccgctaccg
tcgcaatatcaaaccgccatcaaagtgtccaatatcatgaacgcggggaaaaccccagaa
tcccgcgcccgggatatgctctatccagaacagatctaccagaaatttgaagatgaaaat
gcaacctggtggagcttcgatccgcgcgtggaatggctgctcaactatctgaccactcac
cgggacaaaaaagtgctggtgatttgcgctcaggccgccaccgcgttgcaactggaacag
gtattacgtacccgtgaagctatccgggccgccgtcttccacgaaggattgtctattctg
gaacgtgaccgggccgccgcctattttgcttctgaagaggaaggcgcgcaggtgctgatc
tgttcggaaatcggctcagaaggtcgcaacttccagtttgccagtcaccttgtcatgttt
gatctccccttcaacccggatctgctggaacaacgtatcgggcgcctggaccgtatcggt
cagacgcaggaaatccagattctggtgccctatctggaaaataccgcacaagctttgctg
gtacgctggtatcacgaaggtctggatgcctttgagcatacttgccctaccggacgcacc
atttatgacagccactatgaacaactgataacccggctgacgacaccgggtgaacgggaa
ggattagaagagtttatcagcgcttgccgccagcagcatgaagcgcttaagcagcaactg
gaacagggccgtgatcgactgttggaaatgcactccaacggtggtgaacaggcgcaggaa
ctgtgtcaggcgatcgccgagcaggacaacgacgtcaatctggtaaacttcgcactcaat
ctgttcgatattatcgggatccatcaggaagaccgcagtgacaatatgatcatactgacg
ccgtccgatcatatgctggtgccggattttcccggactcccacaggatggctgtactatc
actttcgaccgggaacaggcgttatcccgtgaagacgctcagttcatcagttgggagcat
ccgctgatccgcaacgggctggatctgattctgtccggggaaaccggaagttgtgccgtt
tctctgttgaagaacaaagcgttaccggtaggcacactgctggcggaactggtctatgtg
gtagaagcccaggcaccgaaaaaactccagttaactcgttttctgccaccgaccccggta
cgtctgctgatggatcgtaaagggacgaatctggctgcgcaggtggagttcgaaagtttc
aaccgtcagttgaatgccgtgaatcgtcatacctccagcaaattggtaaatgcggtacag
gcggaagtccacgacatgctgcaaaaagcggagccattggtagaagtacacgcacgccag
ctcattaccgatgcccagcacaatgccgatcaacagttacgtcgtgaactggaacgtctg
gaagcgctgaaagcggttaaccccaacatccgcgatgatgagttgcaggcgctggaaacc
cagcgtgaacaagtattaagcaacctgcagcaagccaactggcgtctggatgcaatccgt
ctggtggtggtttctcaccagtaa
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