Prodigiosinella aquatilis: PCO85_20130
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Entry
PCO85_20130 CDS
T09220
Symbol
nifA
Name
(GenBank) nif-specific transcriptional activator NifA
KO
K02584
Nif-specific regulatory protein
Organism
prod
Prodigiosinella aquatilis
Pathway
prod02020
Two-component system
Brite
KEGG Orthology (KO) [BR:
prod00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
PCO85_20130 (nifA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
prod03000
]
PCO85_20130 (nifA)
Transcription factors [BR:
prod03000
]
Prokaryotic type
Helix-turn-helix
Other families
PCO85_20130 (nifA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_activat
Sigma54_activ_2
HTH_8
GAF_2
GAF
AAA_5
AAA
AAA_2
Mg_chelatase
AAA_3
HTH_23
AAA_16
Parvo_NS1
bpMoxR
TIP49
Motif
Other DBs
NCBI-ProteinID:
WJV53437
LinkDB
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Position
complement(4325453..4327024)
Genome browser
AA seq
523 aa
AA seq
DB search
MTHLPDTGKVVWRFDLSQQFTAVQRISVALSRTTDVGKALQAVLRILHDDAFMQHGMICL
FDKQRGALVIEALHRADEHVVASSSQIRYRPGEGLVGTVMSQRQPLVLKRVADDQRFLDR
LSIYDYDLPFICVPIPGLDQQPIGVLAAQPMALYEDRLPASTRFLETVANLTSQTVRLMQ
PVRRDNDGPVVSSPSPACKVSRPFGFENMVGKSPAMRQTIDIIRQVSKWDTTVLVRGESG
TGKELIANAIHYNSPRASAPFVKFNCAALPDNLLESELFGHEKGAFTGAVRQRKGRFELA
DGGTLFLDEIGESSASFQAKLLRILQEGEMERVGGDETIKVDVRIIAATNRKLEEEVRAG
NFREDLYYRLNVMPVSLPPLRERQEDIIELAHFLVRKIATHQGRQLRISDGAIRLLMSYS
WPGNVRELENCLERAAVMTETGLIDRDVILFNHHDSAPLLPKSSAPIPTDESWLDQSLDE
RQRLIAALEKTGWVQAKAARLLGMTPRQVAYRIQIMDINMHRL
NT seq
1572 nt
NT seq
+upstream
nt +downstream
nt
atgacacatctccctgatacgggcaaagtggtatggcgttttgacttgtctcagcagttt
actgctgtgcaacgtatcagtgtggcattgagccgcaccacggacgttggtaaagcacta
caggcggtactgcggatactgcatgatgatgcatttatgcaacatggcatgatttgcctg
tttgacaaacagcgtggtgcgctggtgatcgaagcattacatcgcgcggatgagcatgtg
gttgccagcagcagccagatacgctatcgcccgggagaagggctggtgggaaccgtgatg
agccagcggcagccactggtgctaaagcgcgtggcagacgatcagcgttttctcgatcgt
ttgagtatctatgactatgacttgccttttatttgtgtcccgatccccggactggatcag
caacctattggtgtactggcggcacagccgatggcactgtatgaggatcgcttaccagcc
agtacccgtttcctggaaacggtggcgaatctgacctctcagacggtacggttgatgcag
ccggtgcgtcgggataatgacggcccggtggtatcatcgccgtcacccgcctgtaaagtg
tctcggccgtttggctttgaaaatatggtgggaaaaagcccggccatgcgccagacgata
gacattattcgccaggtgtccaaatgggataccacggtgttggtgcggggagagagtggt
accggtaaagaactgatcgctaatgctattcactataattccccacgtgcctccgcgccg
tttgtaaaattcaattgtgcggcactgccggataatttgctggaaagcgaactgttcggc
catgaaaaaggggcgtttaccggcgcagtgcgtcagcgtaaagggcgctttgaattggcg
gacggcggcacgctgtttctggatgagattggcgaaagcagtgcatcatttcaggccaaa
ctgctgcgtattttgcaggaaggtgaaatggagcgggtcgggggcgatgaaaccatcaag
gtggatgtgcggatcattgccgccaccaaccgcaaactggaagaggaagtccgggccggt
aattttcgtgaagacctctattaccggttgaatgtcatgccggtatcgctaccgccgctg
cgtgaacgccaggaggatatcattgagctggcccatttcctggtgcggaaaatcgccact
catcagggacggcaattgcgtatcagcgacggtgctatccgtctgctgatgagctacagt
tggccgggcaacgtgcgggaactggaaaattgtctggaaagggcagcggtgatgacggag
accgggctgattgaccgggatgtgattctgttcaatcaccatgactctgcgccgttactc
ccaaaatcctcggctcccatcccgacggatgaaagctggctggatcaaagtctggatgaa
cgtcagcgattgattgccgcgctggaaaaaactggctgggtacaggctaaagcagcccgt
ttactggggatgacgccgcgtcaggtggcctaccgcattcagatcatggatatcaacatg
catcgtctgtaa
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