Prodigiosinella aquatilis: PCO85_21385
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Entry
PCO85_21385 CDS
T09220
Symbol
recQ
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
prod
Prodigiosinella aquatilis
Pathway
prod03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
prod00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PCO85_21385 (recQ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
prod03019
]
PCO85_21385 (recQ)
03400 DNA repair and recombination proteins [BR:
prod03400
]
PCO85_21385 (recQ)
Enzymes [BR:
prod01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
PCO85_21385 (recQ)
Messenger RNA biogenesis [BR:
prod03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
PCO85_21385 (recQ)
DNA repair and recombination proteins [BR:
prod03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
PCO85_21385 (recQ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
Helicase_C
HRDC
RecQ_Zn_bind
ResIII
Helicase_Sgs1
zf-CXXC
Motif
Other DBs
NCBI-ProteinID:
WJV53659
LinkDB
All DBs
Position
complement(4588313..4590139)
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AA seq
608 aa
AA seq
DB search
MSTAEVLNKEALAVQVLRETFGYQQFRPGQQGIINAVIGGQDCLVIMPTGGGKSLCYQIP
ALVMDGLTLVVSPLISLMKDQVDQLQAYGVAAACLNSTQTREQQLEVMTGCRNGQIKLLY
IAPERLTTDSFLEHLTYWNLSLIAVDEAHCISQWGHDFRPEYRALGQIKQRFPSLPIVAL
TATADETTRRDIIRLLDLPDPLIHVSSFDRPNIRYTLVEKFKPLDQLWLFVQGQRGKSGI
IYCNSRAKVEDISARLQNRGLSVAAYHAGLDNNCRAQVQDAFLRDDLQVVVATVAFGMGI
NKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAALFYDPADMAWLRRCLEEKPAGAQ
LDIERHKLNAMGAFAEAQTCRRLVLLNYFGEGRQQPCGNCDICLDPPKRYDGLVDAQKAL
SCVYRVGQRFGMGYIAEVLRGANNQRIREFGHDKLPVYGIGRDKTQEQWVSILRQLIHLG
LLNQNITQHSALQLTEPARPVLRGEVSLQLAVPRMINLKPRASQKSYGGNYDRKLFAKLR
KLRKSIADDANIPPYVVFSDATLLEMAEIMPVTANELLTINGVGHRKLERFGMLFMTLIR
DHLDDKDN
NT seq
1827 nt
NT seq
+upstream
nt +downstream
nt
gtgtctacggcagaagtattgaataaagaagcgctggcagtacaggtactgcgcgagacc
ttcggctatcagcaattccgtccgggtcaacaagggatcatcaacgctgttatcggcggg
caggattgtctggttatcatgcccactggcggtggtaaatccctgtgctatcaaattccc
gccttggtgatggatggcttgacgttggtggtgtcgcctttgatttccctgatgaaagat
caggtggatcaactgcaggcttacggtgtagccgccgcctgcctcaattccacccagacc
agggagcagcaactggaggtgatgacgggttgtcgtaatggtcagattaaactgctgtac
atcgcccctgagcgcctaactaccgacagttttctcgaacatctcacttactggaatctc
tcattgattgcggttgatgaagcacactgtatttctcagtggggacatgatttccggccg
gaataccgggcactgggccagattaagcaacgtttcccttcattaccgattgtggctctg
accgctaccgccgacgaaaccacgcggcgggatatcatccggctgctggatttaccggat
ccgcttatccacgtcagtagttttgaccggcccaatatccgctatacgctggtggagaaa
tttaaaccgctcgaccaactatggctgtttgtacaaggtcagcgtggcaaaagcggcatt
atttactgtaacagccgtgccaaagtggaagatatcagtgcccggttacagaatcggggt
ctgagtgtcgcggcgtatcatgctggtctggataataattgtcgggcgcaggtacaagac
gcgtttctgcgtgacgacttgcaggtggtagtggcgacggtggcatttggtatgggcatc
aacaaacctaacgtgcggtttgtggtgcacttcgatattccacgcaatatcgaatcctat
tatcaggaaaccggacgggctgggcgggatggtctgccagccgaagccgcgttgttttat
gatccggctgatatggcgtggttgcgccgttgtctggaagagaaaccggcgggggcgcaa
ctggatattgagcggcacaagctcaacgccatgggcgcattcgccgaagcgcagacgtgt
cgccgtctggtattgcttaactactttggtgaaggtcgccagcagccttgtggcaactgt
gatatttgcctcgatcctcccaaacgttatgatgggttggtggatgcacagaaggcgtta
tcctgtgtctatcgtgtcgggcaacgcttcgggatggggtatatcgcagaagttctgcgc
ggtgctaataatcagcgtatccgcgagtttgggcatgacaaactgccggtgtatggcatt
ggccgtgataagacgcaagaacaatgggttagcattctgcgacagcttattcatttggga
ttgctcaaccaaaatattactcagcattcggcattgcagttaactgaaccggcgcggcct
gttttgcggggcgaagtatcgttgcaactggcggtgccgcgcatgattaacctgaagccg
cgtgccagtcaaaaatcctacggcggcaactatgatcgcaaactgtttgccaagctgcgg
aaattgcgaaaatccatcgcagatgatgccaatattccgccatatgtggtgttcagtgac
gccacgttgctggaaatggcagaaatcatgccagtaacggccaatgaactgctgaccatt
aatggcgttgggcatcgtaagctagagcgttttggcatgctattcatgacattaattcgc
gatcatcttgacgacaaggataactag
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