Prodigiosinella aquatilis: PCO85_21660
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Entry
PCO85_21660 CDS
T09220
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
prod
Prodigiosinella aquatilis
Pathway
prod03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
prod00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PCO85_21660 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
prod03021
]
PCO85_21660 (rho)
03019 Messenger RNA biogenesis [BR:
prod03019
]
PCO85_21660 (rho)
Transcription machinery [BR:
prod03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
PCO85_21660 (rho)
Messenger RNA biogenesis [BR:
prod03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
PCO85_21660 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
NACHT
OB_RNB
AAA_22
S1CSD-TOTE-2
AAA_25
AAA
DnaB_C
Motif
Other DBs
NCBI-ProteinID:
WJV53709
LinkDB
All DBs
Position
complement(4647014..4648273)
Genome browser
AA seq
419 aa
AA seq
DB search
MNLTELKNTPVSELITLGENMGLENLARMRKQDIIFAILKQHAKSGEDIFGDGVLEILQD
GFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRPPKEGERYFALLKVNEVN
YDKPENARSKILFENLTPLHANSRLRMERGNGSTEDLTARVLDLAAPIGRGQRGLIVAPP
KAGKTMLLQNIAQNIAYNHPDCVLMVLLIDERPEEVTEMQRLVKGEVIASTFDEPASRHV
QVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPSSGKVLTGGVDANALHRPKRF
FGAARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDY
NRSGTRKEELLTTSEELQKMWILRKIIHPMGETDAMEFLINKLAMTKTNDEFFDMMKRS
NT seq
1260 nt
NT seq
+upstream
nt +downstream
nt
atgaatcttaccgaattaaagaacacgccagtttctgagttaattacacttggcgaaaat
atggggctggaaaatctggctcgtatgcgtaaacaggatattattttcgccatacttaag
cagcatgccaaaagtggcgaagatatttttggcgacggtgtgctggaaatattgcaggat
ggttttggtttcctccgctctgctgacagctcctacctcgccggtcctgatgatatctat
gtttctcccagtcaaatccgccggtttaaccttcgtaccggtgatactatctctggtaaa
attcgcccgccgaaagagggagaacgttattttgccttgttgaaagttaacgaagttaac
tatgacaaacctgaaaatgcgcgcagtaagattctgtttgagaacctgactccgctgcat
gctaattcgcgcctgcgtatggaacgtggtaacggttctactgaagatttgactgcccgt
gtgctggatctggctgcgccgattggccgtggtcagcgtggactgattgtggctccgccg
aaagccgggaagaccatgttgttgcagaatattgcgcagaatattgcgtataaccatcct
gattgcgtgctgatggtgttgctgattgacgaacgtccggaagaagtcacagagatgcag
cgtttggttaaaggagaggtgatagcttctacctttgatgaaccggcttcccgccatgtg
caagttgctgagatggtgatcgagaaagccaagcgtcttgttgagcacaaaaaagatgtc
attattctgctggactccattactcgtctggcgcgcgcctataacaccgtcgtaccatcg
tcgggtaaagtattaaccggcggtgtggatgctaacgctttacatcgccctaaacgtttc
tttggcgctgcacgtaacgttgaagaaggtggcagtctgacgattattgccacggcgtta
atcgacaccggctccaaaatggatgaagtgatctacgaagagtttaaaggtactggcaac
atggaactgcatctctctcgtaagatcgcagaaaaacgtgtgttccccgcgattgactac
aaccgttccggtacacgtaaggaagagttgttaaccacatctgaagagctacagaaaatg
tggattctgcgcaaaatcattcatcctatgggtgaaactgatgcgatggagttcctgatt
aataagctggcaatgacgaaaaccaatgatgagttcttcgacatgatgaaacgttcgtaa
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