Prodigiosinella aquatilis: PCO85_21670
Help
Entry
PCO85_21670 CDS
T09220
Symbol
rhlB
Name
(GenBank) ATP-dependent RNA helicase RhlB
KO
K03732
ATP-dependent RNA helicase RhlB [EC:
5.6.2.7
]
Organism
prod
Prodigiosinella aquatilis
Pathway
prod03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
prod00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PCO85_21670 (rhlB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
prod03019
]
PCO85_21670 (rhlB)
Enzymes [BR:
prod01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
PCO85_21670 (rhlB)
Messenger RNA biogenesis [BR:
prod03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
PCO85_21670 (rhlB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
ERCC3_RAD25_C
AAA_22
CMS1
Motif
Other DBs
NCBI-ProteinID:
WJV53711
LinkDB
All DBs
Position
4649142..4650434
Genome browser
AA seq
430 aa
AA seq
DB search
MSKTYLTEQKFSDFALHPKVIEALESKGFHNCTPIQALALPLTLSGRDVAGQAQTGTGKT
LAFLASTFHYLLSHPASAERQTNQPRALIMAPTRELAVQIHSDAEALARITGLKLGLAYG
GDGYDKQLKVLESGVDILVGTTGRLIDYAKQNHISLGAIQVIVLDEADRMYDLGFIKDIR
WLFRRMPPVNQRLNMLFSATLSYRVRELAFEQMNNAEYIEIEPEQKTGYRITEELFYPSN
EEKMRLLQTLIEEEWPDRCIIFSNTKHRCEDIWGHLAADGHRVGLLTGDVAQKKRLRILD
DFTHGNLDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGYSISLA
CEEYALNLTAIESYIGHHIPVSKYDSDALLTDLPAPKRLTRPRSNSGPRRHNSPRRSGAG
APRNNRKRAS
NT seq
1293 nt
NT seq
+upstream
nt +downstream
nt
atgagcaaaacatacttaactgaacagaagttttccgacttcgcactgcacccgaaagtt
atcgaagcacttgaaagtaaagggtttcataactgcacacccatccaggctttggctctg
ccattgaccttgtcagggcgtgatgtagcgggacaagcgcaaaccggtacgggcaagacg
ctggcttttttagcgtctactttccattatctgctttctcaccccgcctcagctgaacgt
cagaccaaccaaccacgggccttgattatggcccccacacgtgaactggcagtacaaatc
cattccgatgcggaagcacttgcgcgcattaccggattgaaattaggcctggcctatggt
ggcgatggttatgacaaacaactgaaagtgctagaaagcggggtagatatcctggtcggc
actacgggccgcctgatcgattatgccaagcagaaccatatcagtctgggcgcgattcag
gttatcgtactggatgaggccgatcgtatgtacgatctgggtttcatcaaagatatccgc
tggctgttccgccggatgccaccggtaaatcagcgtttaaacatgctgttctccgccacg
ctatcctatcgcgtgcgcgaattagcgttcgagcagatgaacaatgcggaatacatagaa
atcgaaccggagcaaaaaaccggttatcgcattacagaagagctattttatccttctaac
gaagaaaaaatgcggttgttacagacactgattgaggaagagtggcctgatcgctgtatt
attttttccaataccaaacaccgttgtgaagacatctggggtcacctcgctgccgacggg
catcgtgtcgggttgctaaccggggatgtggcacagaaaaaacgactgcgtatcttggat
gatttcacccatggcaatttggatattctggtcgccaccgatgttgctgcccgtggcctg
catatccccgccgttacccacgtattcaactatgatctgccggatgactgtgaagactat
gtccaccgcattggtcgtacaggtcgcgctggtgccagtggttactcaataagcctggct
tgcgaagaatacgcactgaatcttactgctattgaaagctatattggacaccatattcct
gtcagcaagtatgacagcgatgcattattgaccgacttacccgcaccgaagcggctgact
cgtccgcgttccaatagcggccctcgtcggcacaattcaccgcgtcgtagcggagccgga
gcaccacgtaacaaccgtaaacgagcgagctga
DBGET
integrated database retrieval system
