Pedobacter roseus: H9L23_02140
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Entry
H9L23_02140 CDS
T06980
Name
(GenBank) formamidopyrimidine-DNA glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
proe
Pedobacter roseus
Pathway
proe03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
proe00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
H9L23_02140
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
proe03400
]
H9L23_02140
Enzymes [BR:
proe01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
H9L23_02140
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
H9L23_02140
DNA repair and recombination proteins [BR:
proe03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
H9L23_02140
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
H2TH
Fapy_DNA_glyco
NFACT_N
Ribosomal_S13
HNOB
Motif
Other DBs
NCBI-ProteinID:
QNN42929
UniProt:
A0A7G9QHV4
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All DBs
Position
501272..502042
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AA seq
256 aa
AA seq
DB search
MAELPDLEVFSRILSRRFAGKLLEKVEVKVSNKLNVTAARLKSSLETRKLKIVKRSGKTL
QFHFEGERVLGLHLMLRGELVSLADNPPKYPILIFHFKGGEGFAVTDMQKQATPTLYPPP
SLVNDALDLDLNTFKKLLDGKKTLIKSLLMDQKKVRGIGNSYGDEILYHAGISPFSISGK
IPEEHIKQLHKSIQHVLKTAIKKIEKENGDELVGELRDFMLIHSFKLKQAPNGKEILSDK
IGGRTTYYTQSQELFH
NT seq
771 nt
NT seq
+upstream
nt +downstream
nt
atggcagagcttccagatttagaagtgttttccagaatcctcagccgcaggttcgcaggt
aaattgctggaaaaagttgaggtaaaggtttcaaacaaactcaacgttacggcagccagg
cttaaatcgtctcttgaaacccgtaaactaaaaatagtgaagcgttcaggtaaaaccctg
cagttccactttgaaggggaaagggtgctagggcttcacctcatgctccgcggagagtta
gtgagcctggcggataatcccccgaaatatccaatcctgatattccatttcaaaggcggc
gaaggttttgctgtaaccgatatgcagaaacaggccacgcccaccctgtatccaccgccc
agtctggtaaatgatgctttagatctggatttaaatacttttaaaaaattgcttgatggc
aaaaagaccctgattaaaagcttgctcatggatcagaaaaaagtccgcgggatcggcaat
tcttatggtgatgaaatcctctaccatgcgggaatttcccctttttccatctcgggtaaa
atacctgaagaacatatcaaacagctccataaaagcattcaacatgttttgaaaacagcc
ataaaaaagatcgaaaaagaaaacggcgatgaactggtaggcgaacttagggattttatg
ctgattcatagcttcaaactaaagcaggccccaaatgggaaggaaatcctttcggataaa
ataggaggtagaaccacctactatacccaaagccaggaactgtttcattaa
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