Pedobacter roseus: H9L23_03675
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Entry
H9L23_03675 CDS
T06980
Symbol
rny
Name
(GenBank) ribonuclease Y
KO
K18682
ribonucrease Y [EC:3.1.-.-]
Organism
proe
Pedobacter roseus
Pathway
proe03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
proe00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
H9L23_03675 (rny)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
proe03019
]
H9L23_03675 (rny)
Messenger RNA biogenesis [BR:
proe03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
H9L23_03675 (rny)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_Y_N
HD
KH_1
HDOD
KH_KhpA-B
DUF7299
Motif
Other DBs
NCBI-ProteinID:
QNN43214
UniProt:
A0A7G9QIN9
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Position
826136..827707
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AA seq
523 aa
AA seq
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MEIVEILGYVFAVIAGIAIGVVVGRFLLRNLLKQQEVAAQNKVKKILKDAENNAEILKKN
KLLEAKEKFLQLKAEHEQEVNAKNNNINQRENTMKQKEQSVNQRMENFNKKEQELDKQKS
QLEKQTEIAIKKQEEVEVLKNQHLTQLETIAGLSAEEAKNQLVENLKEVARTQAMIQIKD
IVDEAKLTASKEAKKVVIQTIQRTATEAAIENSVSIFHIESDEIKGRVIGREGRNIRALE
AATGIEIIVDDTPEAIILSGFDPVRREIARLALHRLVTDGRIHPARIEEIVAKTKKQIED
EIVEIGERTVIDLGIHGLHPELIRMVGRMRYRSSYGQNLLHHSREVANFCATMAAELGLN
AKMAKRAGLLHDIGKVPDDNPELPHAILGMQLAEKYKEHPEICNAIGAHHDEIEMTSMIS
PIIQACDAISGARPGARREVVESYIKRLKDLEELALSYPGVEKTFAIQAGRELRVIVESE
RITDAQAELLAADISTRIQTEMTYPGQIKVTVIRETRSVAFAK
NT seq
1572 nt
NT seq
+upstream
nt +downstream
nt
atggaaatagttgaaatattaggatacgtatttgctgtaatagcaggtatagctatcgga
gtagtggtaggaagattcctcctgcgtaacttgcttaaacagcaggaagttgctgcacag
aacaaggtgaaaaagattttaaaagacgctgaaaataatgccgaaattttaaaaaagaac
aaacttttagaagccaaagagaaatttttacaattaaaagctgagcatgagcaagaagta
aatgccaagaataataacattaaccagcgcgaaaacaccatgaagcagaaagagcaatcg
gtgaaccagcgcatggaaaacttcaataaaaaagagcaggagcttgataaacaaaagagc
cagctcgaaaagcaaaccgaaattgccattaagaagcaggaagaggtagaagtgctaaaa
aatcaacatttaacccaattagaaaccatcgcaggtttatcggccgaagaagctaaaaac
caattggtagaaaacctgaaggaagttgcccgtacacaggccatgatccagattaaggac
attgttgacgaagcaaaacttactgcaagcaaggaagctaaaaaagtggttattcaaacc
attcaacgtaccgctaccgaagctgctatcgagaattctgtatctattttccatatcgaa
agcgatgagattaaaggtcgtgttattggtagagagggtagaaatatccgtgctttagaa
gccgcaaccggtatcgaaattattgttgacgatactcctgaagcgattattttatctggt
ttcgatccggtaagaagagaaattgcccgtttagcattacaccgtttagttaccgacgga
cgtatccacccggcccgtatcgaagagattgtagcgaaaaccaaaaaacagatcgaagat
gagatcgtagaaattggtgagcgcaccgtaatcgatttaggtattcacggtttgcaccct
gagctgatccgtatggttggccgtatgcgttaccgttcatcttatggtcaaaacctttta
catcactctcgtgaggtagccaatttctgtgctacaatggcggcagaattgggtttaaat
gctaaaatggccaaacgtgcaggtttattgcatgatataggtaaagtacctgatgataac
ccagaattgccacacgcaatcttagggatgcaactggcagaaaaatataaagaacatcct
gaaatttgtaatgcaattggagcccaccacgatgaaatcgagatgacttcaatgatctca
ccgattattcaggcttgcgatgcgatttctggtgcccgcccaggtgcacgccgtgaggtg
gtagaaagttacatcaaacgtttgaaagatctggaagaattggctttatcttacccaggt
gttgagaaaactttcgctatccaggcaggtagagagttacgtgtaattgtagaaagcgag
cgcattaccgatgcacaggcagaacttttagctgctgatatttctacccgtattcaaaca
gaaatgacttaccctggtcagattaaggttaccgtaatcagggaaacccgttctgtagcc
tttgctaaataa
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