Pedobacter roseus: H9L23_03830
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Entry
H9L23_03830 CDS
T06980
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
proe
Pedobacter roseus
Pathway
proe03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
proe00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
H9L23_03830 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
proe03021
]
H9L23_03830 (rpoC)
03400 DNA repair and recombination proteins [BR:
proe03400
]
H9L23_03830 (rpoC)
Enzymes [BR:
proe01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
H9L23_03830 (rpoC)
Transcription machinery [BR:
proe03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
H9L23_03830 (rpoC)
DNA repair and recombination proteins [BR:
proe03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
H9L23_03830 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
RPOC_hybrid
Motif
Other DBs
NCBI-ProteinID:
QNN43240
UniProt:
A0A7G9QIR5
LinkDB
All DBs
Position
854301..858587
Genome browser
AA seq
1428 aa
AA seq
DB search
MSYKKDNKLKSNFTSITISLSSPEIILERSSGEVLKPETINYRTYKPERDGLFCERIFGP
VKDYECHCGKYKRIRYKGIVCDRCGVEVTEKKVRRERMGHIALVVPVAHIWYFRSLPNKI
GYLLGLPTKKLDLIIYYERYVVIQSGLMAEEGINYMDFLTEEEYLDILDKLPKENQYLDD
KDPNKFIAKMGAEALEDLLKRIDLDTLSYDLRHQAANETSQQRKNEALKRLQVVEAFRGA
NTRIENRPEWMIVKIVPVIPPELRPLVPLEGGRFATSDLNDLYRRVIIRNNRLKRLIEIK
APEVILRNEKRMLQEAVDSLFDNSRKVNAVKTEGNRALKSLSDILKGKQGRFRQNLLGKR
VDYSARSVIVVGPSLKLHECGIPKDMAAELYKPFIIRKMIERGVVKTVKSAKKIVDRKDP
LVWDILENVLKGHPVLLNRAPTLHRLGIQAFQPKLIEGKAIQLHPLVCTAFNADFDGDQM
AVHLPLGNAAILEAQVLMLAAHNILNPANGTPITVPSQDMVLGLYYITKGRRTDETRVVK
GQDSNFYSPEEVIIAYNEKELDLHAFIKVRVNVKQNDGSIVNKLTETTVGRVLFNQMVPE
EVGYINELLTKKSLRDIIGEVVKMTGMARSSQFLDDIKELGFRMAFQGGLSFNLQDVNIP
VEKHTLLEQAANEVEEVRNNYNMGFITNNERYNQIIDIWTRINNRLTTFVMNQLSSDNQG
FNSVYMMLDSGARGSKEQIRQLCGMRGLMAKPQKSGSGGDIIENPILSNFKEGLSVLEYF
ISTHGARKGLADTALKTADAGYLTRRLHDVAQDMIVNSVDCGTLRGMYTTALKDQEDIVE
PLYDRILGRTSLHDVYNPLDNTLLVSAGEDINEEVAKLIEESPLEGIEIRSVLTCENKRG
VCALCYGRNLASGKRVQRGEAVGVIAAQSIGEPGTQLTLRTFHVGGTASNIAAESNIVAK
FDGVIEFENIRTVDTQTEEGTVQVVLGRSGEFKIVEPGTGRIIVTNNIPYGAFLFVKEGD
KLSKGDKICSWDPYNAVILSEFAGKAQFDAIIEGVTFREESDEQTGHREKVIIDTRDKTK
NPSVQIVDKKGEFIKGYNIPVGAHVSVDEGETIQTGQIIAKIPRATGKTRDITGGLPRVT
ELFEARNPSNPAVVTEIDGVVTLGGVKRGNREITIESKDGEVKKYLVPLSKHILVQDNDF
VKAGMPLSDGSISPADILSIKGPAAVQEYLVNGIQEVYRLQGVKINDKHFEVIVHQMMQK
VHIEDPGDTIFLENNAVDRWDFADENDAMYDKKVVEDAGDSTEIKPGQIVSLRKLRDENS
QLKRKDLKQITVRDARPATASSILQGITRASLGTKSFISAASFQETTKVLNEAAIAGKRD
NMLGLKENVIVGHLIPSGTGVRGYERIIVGSQEEYDKLLASKQEEVEA
NT seq
4287 nt
NT seq
+upstream
nt +downstream
nt
atgtcttacaaaaaggataataaattaaaaagcaatttcacatccatcacgatcagctta
tcgtctccggaaattattttggaacgctcaagcggtgaggtgttgaaaccagaaaccatt
aactaccgtacttacaaacctgagcgtgatggtttgttctgtgagcgtatttttggtccg
gtaaaagattacgaatgtcattgcggtaaatacaaacgtatccgttataaaggtattgtt
tgcgaccgttgtggtgttgaagtaacggagaaaaaagtacgtcgtgagcgtatgggacac
attgctttagtggttcctgttgcacacatctggtatttccgctctttaccaaacaaaatc
ggttatttattaggtttacctactaaaaaacttgatttaattatctattatgagcgttac
gtagttattcagtcaggtttaatggctgaagaaggtatcaactatatggacttcttaaca
gaggaagaatatttagatatcttagataaattacctaaagaaaatcaatatttagacgat
aaagatcctaataaattcatcgccaaaatgggtgctgaagcattagaagatttattaaaa
cgtattgacttagatactttatcttacgatctacgtcaccaggctgctaacgaaacttct
caacaacgtaaaaatgaggctttaaaacgtcttcaggttgttgaagctttccgtggtgcc
aatacacgtatcgagaatcgccctgagtggatgattgttaaaatcgttccggttattcca
ccagaattacgtccgttggttccattagaaggtggccgtttcgctacttccgatttaaat
gatttataccgtcgtgtaattatccgtaacaaccgtttaaaacgtttgatcgagattaaa
gcaccagaggtaattttacgtaacgagaaacgtatgttgcaggaagctgtagattcgtta
tttgataactcacgtaaagttaacgcggtaaaaactgaaggtaaccgtgctttgaaatca
ctttcagatatcctgaaaggtaaacaaggtcgtttccgtcagaacttattgggtaaacgt
gtggattattcagctcgttcggtaattgttgtagggccaagccttaaattacacgagtgc
ggtattcctaaagatatggctgctgagctttacaaaccatttatcattcgtaaaatgatt
gagcgtggtgtagtaaaaacagttaaatctgctaagaaaattgttgatagaaaagatccg
ttagtttgggatatcttagaaaatgtactaaaaggtcacccggtattattaaaccgtgca
cctacactacacaggctaggtattcaggctttccagccgaaattaattgaaggaaaagca
atccagttacacccattagtttgtaccgcattcaacgccgattttgatggtgaccagatg
gctgtccacttaccactaggtaacgcagcaattttggaagcccaggtattaatgttggct
gcacacaacatcttaaaccctgcaaacggtacgccaattacagtaccatctcaggatatg
gttttgggtctttattacattactaaaggccgtagaactgatgaaacaagggttgtaaaa
ggacaagattcaaatttctattctccggaagaagtaatcattgcttataacgagaaagaa
ttagatcttcatgcttttatcaaagtaagggtaaatgttaagcaaaatgacggttctatc
gttaataaattaactgaaactactgttggtagggtattgtttaaccaaatggttcctgaa
gaagttggttacatcaacgagttattaactaaaaaatcgttaagagatattatcggtgag
gtagttaaaatgactggtatggcacgttcttctcaattcttggatgatatcaaagaatta
ggtttccgtatggcatttcagggaggtttatcgttcaacttacaagacgttaacattccg
gttgagaaacatactttattagagcaggctgctaacgaagttgaagaggtaagaaacaac
tataacatgggtttcattaccaacaacgagcgttacaaccaaatcatcgatatctggaca
cgtatcaataacaggttaactacattcgtaatgaaccagttatcaagcgataaccaaggt
tttaactcggtgtatatgatgcttgattctggagcacgtggatccaaagagcagattcgt
cagctttgcggtatgcgtggtttgatggcaaaacctcaaaaatccggttcaggtggtgat
atcattgaaaacccgatcttatcaaactttaaagaaggtttatcggtattagagtacttt
atctctactcacggtgcgcgtaaaggtttggcagatacggcgttaaaaacagctgatgcg
ggttacttaacccgtcgtttacatgatgttgcacaagatatgattgttaactctgttgat
tgtggtactttaagaggtatgtacacaactgcgttaaaagatcaggaagatattgttgag
ccattatacgacaggattttaggccgtacttcattacatgatgtttacaatcctttggat
aacacattattagtaagtgctggtgaagatattaacgaagaagttgctaaactgatcgaa
gagtctccgttagaaggtatcgaaattcgttcggtattaacttgcgagaacaaacgtggt
gtttgtgcactatgttacggtcgtaacttagcatctggtaaacgcgttcaaagaggtgag
gcagttggtgtaattgcagcacaatcaatcggtgagccgggtacacagttaacacttcgt
actttccacgtgggtggtactgcatcaaacattgctgcagaatcaaacattgtagctaag
tttgacggtgtaatcgaattcgaaaatattcgtactgttgatacacaaacagaagaagga
acagttcaggtagtattaggtcgttcaggtgagttcaaaattgttgaaccaggaaccgga
cgtatcattgtaaccaacaacattccttacggtgcattcttattcgtaaaagaaggcgat
aaactttcaaaaggtgataaaatctgttcatgggatccgtacaacgcggttattctatca
gaatttgccggtaaagcacaatttgatgccattattgaaggtgttaccttccgtgaagaa
tcagatgagcaaactggtcaccgtgaaaaagtaattatcgatacacgcgataaaacgaaa
aacccttcagttcagattgttgataagaaaggtgaattcatcaaaggttataacattccg
gtaggagcccacgtttcagttgatgaaggtgaaactatccaaactggacagattatcgct
aagattcctcgtgcaactggtaaaaccagggatattacgggtggtttacctcgtgtaacg
gaattatttgaagcacgtaatccatctaacccagcggtagtaactgagattgatggtgtg
gtaactttaggtggcgttaaacgtggtaaccgtgagatcacaatcgaatcaaaagatggt
gaagttaaaaaataccttgttccattgtctaaacatatccttgtacaggataatgacttt
gtgaaggcgggtatgcctttatcagatggttcaatttctcctgctgatatcttatcaatt
aaaggccctgcagctgttcaggaatacttagtaaatggtattcaagaagtttaccgttta
caaggtgtaaaaattaacgataagcacttcgaggtaattgttcaccagatgatgcagaaa
gttcacattgaagatccgggtgatactattttcttagaaaacaatgctgttgaccgttgg
gattttgccgatgagaacgatgcaatgtacgacaagaaagttgttgaagatgcaggtgat
tctacagaaatcaaaccaggtcagattgtttcgttacgtaaattaagagacgaaaattct
cagttaaaacgtaaagatttaaaacagatcacggttagagatgcaagaccagcaactgca
agttctatcttacaaggtattacacgtgcatcattaggtactaaatcgttcatttctgcg
gcttcgttccaggaaactacgaaagtattaaatgaggcagcaattgcaggtaaacgcgat
aatatgttaggcttgaaagaaaacgtgatcgtaggtcacttaatcccttcaggtactggt
gtacgtggttacgaaagaatcatcgttggttctcaggaagaatacgataaattattggct
tcgaaacaagaagaagttgaagcttag
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integrated database retrieval system
