Pedobacter roseus: H9L23_08325
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Entry
H9L23_08325 CDS
T06980
Symbol
topA
Name
(GenBank) type I DNA topoisomerase
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
proe
Pedobacter roseus
Brite
KEGG Orthology (KO) [BR:
proe00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
proe03032
]
H9L23_08325 (topA)
03400 DNA repair and recombination proteins [BR:
proe03400
]
H9L23_08325 (topA)
Enzymes [BR:
proe01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
H9L23_08325 (topA)
DNA replication proteins [BR:
proe03032
]
Prokaryotic type
DNA Topoisomerases
H9L23_08325 (topA)
DNA repair and recombination proteins [BR:
proe03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
H9L23_08325 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Toprim_C_rpt
Toprim
Motif
Other DBs
NCBI-ProteinID:
QNN44066
UniProt:
A0A7G9QL41
LinkDB
All DBs
Position
complement(2021050..2023614)
Genome browser
AA seq
854 aa
AA seq
DB search
MAKNLLIVESPAKAKTIEGYLGKDFLVKSSYGHIRDLVKGDMAIDIKNNFAQTYEVPADK
KNVVAELKKLAKEAEMVWLASDEDREGEAISWHLFETLGLKVEKTKRIVFHEITKPAILK
AIESPRGIDYNLVNAQQARRVLDRLVGFELSPVLWKKVKPSLSAGRVQSVAVRLIVDRER
EVLNFNAAAAYKITAQFSTGKGKEMVKAELPQRFESEADAEKYLQDCINAKFDITSLETR
PAKRNPAAPFTTSTLQQEASRKLGFSVARTMQVAQRLYEAGKITYMRTDSLNLSETALNA
AAAEIKSAYGDKYHQHRVYKTKSAGAQEAHEAIRPTYFDRHTVDGDISEKRLYDLIWKRA
IASQMSEALFEKTTAQITASTRKEHLVAEGEVLKFDGFLKVYLESTDDEETEEKEGGAIL
PPLAKGQELFLKEMQATERYSRPPARYTEASLVKKLEELGIGRPSTYAPTISTVQNRGYV
VKEDRDGKPRKFTSIVLADGQVKKEIKSEITGAEKSKLFPTDIGEVVNDFLVEHFKGIVD
FNFTAKVEKEFDEIAQGLQEWTKMLHSFYNPFHSEVETTLETAERATGERLLGLDPATGK
NVYTKVGKFGPLVQIGELDEEEKPRYASLMRNQSVATITLDDALELFKLPFQLPDFEGKE
VMIGVGRFGPYVKWGESFISLPKNEEPLSVTYDRAVEIIKQKMDDDAPIAHYEGLGVTKG
KGRFGPFIKWNDLFINIPAKGYDFDNLSQEDINTLISKKVEKEANRFIKTWDAEKISIEN
GRWGPFIRFGKLMLKLRYNEATKQKYTPEELVDIDLEVVKKMIVEQVPNAFETKKKAPAK
KKAVPAKKAVAKKK
NT seq
2565 nt
NT seq
+upstream
nt +downstream
nt
atggccaaaaatttattaatcgtcgagtcacccgcaaaagctaaaactatagaaggatac
ctgggaaaagatttcctggtgaaatcaagctatggccatatcagggatttagtgaaaggc
gatatggcgattgatattaaaaataattttgcccaaacctatgaggtacctgccgacaag
aaaaatgtcgtcgccgaattgaaaaaactagctaaggaagccgaaatggtatggctggca
tccgatgaagaccgtgagggagaagccatttcctggcacttattcgaaactttaggcctg
aaagtagagaaaacaaaacgtattgtttttcatgagattaccaaacccgccattttaaaa
gcgattgaaagtccacgtggaatcgattataatttagtaaatgcacaacaggctcgccgt
gtattggatagattggttggtttcgaactttctcccgttttatggaaaaaagtaaaacca
tcactttctgcaggtcgtgtacaatctgttgcagtacgtttaattgtagacagagaaaga
gaagttttaaactttaatgcagctgctgcctataaaattaccgcacaattttctacaggt
aaaggaaaagaaatggttaaggcagaattgccgcaacgttttgaaagcgaagcagatgca
gaaaaatatcttcaggactgtataaatgctaaattcgatattacgagtttagaaacgcgc
ccggcaaaacgcaatccggctgctccttttactacttcaaccctgcagcaggaagcttcg
agaaaattaggtttttcggtggccagaaccatgcaggtggcacaaagactgtacgaagca
ggtaagattacctacatgagaacagactctttaaacttatcagaaacggctttaaatgct
gccgctgcagagattaaatctgcttatggagataaataccaccaacaccgcgtttataaa
acaaaatcagctggtgcacaagaggctcacgaagccatccgccctacttatttcgacaga
cacactgtagacggggatatttcagagaaacgtttgtacgacctgatctggaaacgtgcg
attgcctcgcagatgagcgaagcattattcgaaaaaaccactgctcaaatcacagcttca
acccgaaaagagcatttggtggctgaaggtgaagtattaaaattcgatggtttcttaaaa
gtttatctggaatcgactgacgatgaagaaactgaagaaaaagaaggtggtgcaattttg
cctcctttagccaaagggcaagaattatttttaaaagaaatgcaggctacggaacgttac
tcacgtccgccagcaagatatacagaggccagtttggttaaaaaactagaagaactgggt
attggccgtccatctacttatgcaccgaccatttctacggtacaaaaccgtggttatgtg
gtaaaagaagacagggatggtaaaccacgtaaatttacatctatcgttttagccgatgga
caggtaaaaaaagaaattaaatcggaaattaccggggcagaaaaatcgaaactcttccct
accgatattggtgaggtggtaaacgatttcttagtggaacattttaaaggtatcgtcgat
tttaactttaccgctaaagtggaaaaggaatttgacgaaattgcgcaaggtttacaggag
tggaccaaaatgctgcactctttttataatcctttccatagcgaagtagaaactacctta
gaaaccgctgaacgcgctacaggtgagcgtttattgggcttagatcctgcaacaggtaaa
aatgtatacactaaagtaggtaaatttggaccattggttcagataggtgagcttgatgag
gaagaaaagccacgttatgccagtttaatgcgtaatcaatcggtggctaccattacttta
gatgatgcattggaattgtttaaacttcctttccaattgcctgattttgaaggtaaagag
gtaatgattggcgtaggccgcttcgggccttatgttaaatggggcgaaagttttatttca
cttcctaaaaatgaggaacctttatcggtaacttatgatagagcggttgaaattatcaaa
cagaaaatggatgatgatgcaccaattgcacattacgaaggtttaggcgtaacaaaaggt
aaaggccgtttcggtccttttattaaatggaacgacctgtttattaatatacctgcaaaa
ggatatgatttcgacaatttatcacaggaagatatcaatactttaatcagcaaaaaagta
gaaaaagaagccaaccgctttattaaaacctgggatgctgaaaaaatttctattgaaaat
ggccgctggggaccgtttatccgttttggcaaattgatgcttaaattgagatacaacgag
gctaccaaacaaaaatatacaccagaagaactggttgatattgatttagaagtggtgaag
aaaatgattgtagaacaggtgccaaatgctttcgaaacaaagaaaaaggctcctgcaaag
aaaaaagcagtacccgctaaaaaggcagtagcgaagaagaaataa
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