Pedobacter roseus: H9L23_09990
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Entry
H9L23_09990 CDS
T06980
Symbol
recQ
Name
(GenBank) DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
proe
Pedobacter roseus
Pathway
proe03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
proe00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
H9L23_09990 (recQ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
proe03019
]
H9L23_09990 (recQ)
03400 DNA repair and recombination proteins [BR:
proe03400
]
H9L23_09990 (recQ)
Enzymes [BR:
proe01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
H9L23_09990 (recQ)
Messenger RNA biogenesis [BR:
proe03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
H9L23_09990 (recQ)
DNA repair and recombination proteins [BR:
proe03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
H9L23_09990 (recQ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
RecQ-1-like_HTH
Helicase_C
RQC
HRDC
RecQ_Zn_bind
ResIII
HTH_40
Motif
Other DBs
NCBI-ProteinID:
QNN45039
UniProt:
A0A7G9QNW4
LinkDB
All DBs
Position
2377314..2379503
Genome browser
AA seq
729 aa
AA seq
DB search
MDVKKSLFDNLQNFFGFDNFKGDQESIITNILEGNNTFVIMPTGGGKSICYQLPALMSEG
TAIVISPLIALMKNQVDQLRAFGGNDSIAHFLNSSLNKSEITQVKSDLLSGQTKLLYVAP
ESLAKQDNIEFLNLIKISFVAVDEAHCISEWGHDFRPEYRKIKQVIAGLGDNIPIIALTA
TATPKVQQDIMKNLGMTEATLFKSSFNRPNLFYEIRPKRDITKEIIKYIKSNPGKSGIIY
CLSRKKVEEVAEALNLNGISALPYHAGLDPKVRAETQDKFLMEDAEVIVATIAFGMGIDK
PDVRFVIHHDVPKSMEGYYQETGRAGRDGGEGVCIAFYSQKDVDKLAKFMKDKPVSEREI
GTQILKEVIDYAESGVCRRKQILHYFGENFNETGCNCMCDNCKKPKKQFDAENQLSTVLK
FIEKSGEKFDDAHLLNVFLGLETAQTIAYEHSKVPEFGIGKEDGELMWKSIIRQAVLNNY
LYKDIDNYGLLKLTKQGRDFIVNPYSLKFILNEPIESGADDDDDDVKQGTGALDTHLLSL
LKDLRKKIAKQKSVPPFVVFQDPSLEEMCTHYPITMEELRQISGVGSGKAMKFGSPFIEL
IKKYVEDNDIERPIDLIIKTQANKSQMKVSIIQNIDRQIGLEDIADSKGITYEEILKEVE
SIVNSGTKLNLNYFIDEVIDDDRQDEVFDYFRAAESDSIDEALNELGETDYTREEIQLMR
IKFMSELGN
NT seq
2190 nt
NT seq
+upstream
nt +downstream
nt
atggacgtgaaaaagtcgttatttgataacctacaaaatttcttcgggtttgacaatttc
aagggtgatcaggagtcgatcataacaaatattttagaaggcaataacacttttgttatt
atgccaacaggtggagggaagtctatttgctatcagttacccgctttaatgagcgaggga
acagcaattgttatttctccattaattgcattgatgaaaaaccaggtagaccaattaagg
gcttttggtggaaatgacagtattgcacattttcttaattcatccctaaataaatctgaa
attactcaagtaaaatctgatcttttaagcggtcagaccaaattattgtatgttgcgccc
gaatccctggcgaaacaggacaatattgaatttttgaatctgattaaaatctcctttgtc
gcagttgacgaggcgcattgtatctctgaatgggggcacgatttcagaccagaataccgt
aaaatcaagcaggttattgcaggtttgggagataatattccaattatagcattaactgct
actgctacgccaaaggttcagcaggatattatgaagaacctgggaatgaccgaagcaacg
ttgttcaaatcgtcgtttaacagaccgaacttgttttacgaaattcgccctaaacgtgat
attactaaagagattatcaagtatataaaatcaaatccaggcaaatcaggaattatttat
tgcctcagccgtaaaaaggtagaggaagtagcagaagccctgaacctgaatggaattagt
gctttaccttaccatgcgggtttagacccaaaagtgcgtgccgaaacgcaggataaattt
ttgatggaagatgccgaggttattgttgccaccattgcctttggtatggggatcgataaa
ccggatgtacgctttgtaatccaccacgatgtgcctaaaagcatggaaggctactatcag
gaaacgggtagggctggtcgcgatggtggcgagggtgtgtgtatcgctttttactctcaa
aaagatgtagataagctggctaagtttatgaaagataaaccggtttcggaacgagaaatt
ggtacacagatattaaaagaagtgatcgattatgcggagtctggcgtttgcaggcgtaag
cagattcttcattattttggcgaaaactttaacgaaacaggttgtaactgcatgtgcgat
aattgcaaaaaacctaaaaaacagtttgatgccgaaaaccaattgtcgaccgtattaaag
tttatagaaaaatcgggagaaaaatttgatgatgctcacttactgaacgtttttttaggt
ttagaaactgcacaaaccattgcctacgagcacagtaaagtacccgaatttggtattggc
aaggaagatggtgagttaatgtggaaatcaattatccgccaggcggtgctaaataattat
ctctataaggatattgacaattacggtttattaaaattaaccaaacagggaagagacttt
atcgtaaatccttacagccttaaatttatattaaacgagccgattgaaagtggtgccgac
gatgacgatgatgatgtaaaacagggcactggtgctttagatacccaccttttatcattg
cttaaagatttacgcaagaaaattgcgaagcagaaaagcgttccgccatttgttgttttc
caggatccatctttagaagaaatgtgcacgcattatccgattacaatggaagaacttcgc
cagatttcgggtgtaggttctggtaaagccatgaaattcggaagcccttttatcgaattg
attaaaaaatacgtggaggataacgatatcgagcgtccgattgacctgattattaagacc
caggccaataaatcgcagatgaaggtttctattatccaaaatatcgacagacagattggt
ttagaggatattgcggattcaaaaggcattacttatgaagaaatccttaaagaagtagaa
tcaattgtaaactctggtactaaacttaacctgaattatttcattgatgaagtaattgat
gatgatcgccaggatgaagttttcgattatttcagggcggcagaaagcgattctatagac
gaagcactaaacgaattaggcgaaaccgattacacccgcgaagaaattcaactgatgcgg
attaaattcatgtcagaactaggaaattaa
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